miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28757 3' -49.1 NC_006146.1 + 155233 0.75 0.791077
Target:  5'- cAGGCUGUGGGucAGGGCgUGCAGGUGc -3'
miRNA:   3'- -UUUGACGUCUuuUCCCG-ACGUCUAUc -5'
28757 3' -49.1 NC_006146.1 + 52065 0.68 0.988265
Target:  5'- gAAACgguaGCAuGAcgGGAGGGCUGCGGucgGGg -3'
miRNA:   3'- -UUUGa---CGU-CU--UUUCCCGACGUCua-UC- -5'
28757 3' -49.1 NC_006146.1 + 89464 0.68 0.989742
Target:  5'- -uGCaGCGGGAGuuuucuGGGUUGCGGGUAa -3'
miRNA:   3'- uuUGaCGUCUUUu-----CCCGACGUCUAUc -5'
28757 3' -49.1 NC_006146.1 + 80703 0.66 0.997668
Target:  5'- cGAGCaGCgaAGAAGAGGGCggccgagauucggacUcGCAGAUGGa -3'
miRNA:   3'- -UUUGaCG--UCUUUUCCCG---------------A-CGUCUAUC- -5'
28757 3' -49.1 NC_006146.1 + 76577 0.72 0.925666
Target:  5'- -cAUUGCGGGAuGGGGCcGCAGAg-- -3'
miRNA:   3'- uuUGACGUCUUuUCCCGaCGUCUauc -5'
28757 3' -49.1 NC_006146.1 + 57063 0.71 0.931289
Target:  5'- ----gGCGGGAGGGGGCcugacGCGGAUGGc -3'
miRNA:   3'- uuugaCGUCUUUUCCCGa----CGUCUAUC- -5'
28757 3' -49.1 NC_006146.1 + 89806 0.71 0.936637
Target:  5'- aGGACgagGCAGAGgcGGGGGCgUGgAGGUGGa -3'
miRNA:   3'- -UUUGa--CGUCUU--UUCCCG-ACgUCUAUC- -5'
28757 3' -49.1 NC_006146.1 + 158388 0.71 0.941712
Target:  5'- cGGGCUGCGcGAAGGGGUUGCAcGAg-- -3'
miRNA:   3'- -UUUGACGUcUUUUCCCGACGU-CUauc -5'
28757 3' -49.1 NC_006146.1 + 41070 0.7 0.959334
Target:  5'- -cGCU-CGGAcgGGGGCgugGCGGGUGGg -3'
miRNA:   3'- uuUGAcGUCUuuUCCCGa--CGUCUAUC- -5'
28757 3' -49.1 NC_006146.1 + 30253 0.68 0.986628
Target:  5'- uGGCcGCA-AAAAGGGCUGUAGAg-- -3'
miRNA:   3'- uUUGaCGUcUUUUCCCGACGUCUauc -5'
28757 3' -49.1 NC_006146.1 + 71385 0.69 0.978529
Target:  5'- uGACUGCuGGuggccGAGGGCgacguugcauuuuggGCAGGUAGg -3'
miRNA:   3'- uUUGACGuCUu----UUCCCGa--------------CGUCUAUC- -5'
28757 3' -49.1 NC_006146.1 + 162337 0.7 0.955323
Target:  5'- -uGCUGCAGccc-GGGCUGCAGcUAu -3'
miRNA:   3'- uuUGACGUCuuuuCCCGACGUCuAUc -5'
28757 3' -49.1 NC_006146.1 + 64897 0.74 0.846259
Target:  5'- uGGACUGaAGAAAGGGGUcGUGGAUGGg -3'
miRNA:   3'- -UUUGACgUCUUUUCCCGaCGUCUAUC- -5'
28757 3' -49.1 NC_006146.1 + 107593 0.69 0.980658
Target:  5'- ----gGCAGAGcAGGGCaGCAGAcAGg -3'
miRNA:   3'- uuugaCGUCUUuUCCCGaCGUCUaUC- -5'
28757 3' -49.1 NC_006146.1 + 166863 0.72 0.907155
Target:  5'- gAAGCccgGCGGGAGGGGGgaGCGGAg-- -3'
miRNA:   3'- -UUUGa--CGUCUUUUCCCgaCGUCUauc -5'
28757 3' -49.1 NC_006146.1 + 44531 0.71 0.946048
Target:  5'- uGACggGCGGAGgacggugGGGGGCUGCGG-UGGa -3'
miRNA:   3'- uUUGa-CGUCUU-------UUCCCGACGUCuAUC- -5'
28757 3' -49.1 NC_006146.1 + 133816 0.69 0.982835
Target:  5'- cAACUGCucaGGGGAGGGGgUGaGGAUGGu -3'
miRNA:   3'- uUUGACG---UCUUUUCCCgACgUCUAUC- -5'
28757 3' -49.1 NC_006146.1 + 107392 0.68 0.988265
Target:  5'- aAAGCguaGCAGGGuccAGGGCUGCGGcGUGc -3'
miRNA:   3'- -UUUGa--CGUCUUu--UCCCGACGUC-UAUc -5'
28757 3' -49.1 NC_006146.1 + 166659 0.72 0.913598
Target:  5'- aGAGCgaGCGGGAAGGGGgaGCGGuGUGGc -3'
miRNA:   3'- -UUUGa-CGUCUUUUCCCgaCGUC-UAUC- -5'
28757 3' -49.1 NC_006146.1 + 125147 0.71 0.931289
Target:  5'- -cGCUGUAGGAGAGGaGCUGCccccGGAg-- -3'
miRNA:   3'- uuUGACGUCUUUUCC-CGACG----UCUauc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.