Results 1 - 20 of 57 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28757 | 3' | -49.1 | NC_006146.1 | + | 49580 | 0.72 | 0.900441 |
Target: 5'- -cGCUGaggcCAGGGuGGGGCUGUGGAUGGu -3' miRNA: 3'- uuUGAC----GUCUUuUCCCGACGUCUAUC- -5' |
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28757 | 3' | -49.1 | NC_006146.1 | + | 72514 | 0.67 | 0.993317 |
Target: 5'- --cCUGCGGAGGAGcggacGGCUGCGGc--- -3' miRNA: 3'- uuuGACGUCUUUUC-----CCGACGUCuauc -5' |
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28757 | 3' | -49.1 | NC_006146.1 | + | 79120 | 0.68 | 0.991561 |
Target: 5'- uGAGCUGCAGGAAaucaagccaugggucGGGGaggaGCAGAUu- -3' miRNA: 3'- -UUUGACGUCUUU---------------UCCCga--CGUCUAuc -5' |
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28757 | 3' | -49.1 | NC_006146.1 | + | 24186 | 0.68 | 0.991069 |
Target: 5'- uGGACaggGCAGAGGAGGGCUGgGccuGcgAGg -3' miRNA: 3'- -UUUGa--CGUCUUUUCCCGACgU---CuaUC- -5' |
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28757 | 3' | -49.1 | NC_006146.1 | + | 88585 | 0.68 | 0.989742 |
Target: 5'- gGAGCUGguGggGgcuGGGGCUGUu-GUGGc -3' miRNA: 3'- -UUUGACguCuuU---UCCCGACGucUAUC- -5' |
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28757 | 3' | -49.1 | NC_006146.1 | + | 51176 | 0.69 | 0.980658 |
Target: 5'- uGGgUGUGGAAGGGGGuCUGCGGGcUGGc -3' miRNA: 3'- uUUgACGUCUUUUCCC-GACGUCU-AUC- -5' |
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28757 | 3' | -49.1 | NC_006146.1 | + | 77828 | 0.69 | 0.978282 |
Target: 5'- aGGACgGCGGAGggGGGGGCggGgGGGUGGg -3' miRNA: 3'- -UUUGaCGUCUU--UUCCCGa-CgUCUAUC- -5' |
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28757 | 3' | -49.1 | NC_006146.1 | + | 14976 | 0.69 | 0.975696 |
Target: 5'- cAACggGCaaGGGAGAGGGCUGCGGc--- -3' miRNA: 3'- uUUGa-CG--UCUUUUCCCGACGUCuauc -5' |
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28757 | 3' | -49.1 | NC_006146.1 | + | 8568 | 0.71 | 0.946516 |
Target: 5'- uAGCUGCAGccc-GGGCUGCAGc--- -3' miRNA: 3'- uUUGACGUCuuuuCCCGACGUCuauc -5' |
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28757 | 3' | -49.1 | NC_006146.1 | + | 132075 | 0.67 | 0.994257 |
Target: 5'- uGAGCUGCcccAGGcucAGGGccuGGCUGCAGAUGu -3' miRNA: 3'- -UUUGACG---UCU---UUUC---CCGACGUCUAUc -5' |
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28757 | 3' | -49.1 | NC_006146.1 | + | 105314 | 0.66 | 0.996273 |
Target: 5'- cAGACUGCgaaauggaccccauGGAGGAGGGUgagGUAGAc-- -3' miRNA: 3'- -UUUGACG--------------UCUUUUCCCGa--CGUCUauc -5' |
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28757 | 3' | -49.1 | NC_006146.1 | + | 60612 | 0.66 | 0.997012 |
Target: 5'- --cCUGCu----GGGGCUGCGGAg-- -3' miRNA: 3'- uuuGACGucuuuUCCCGACGUCUauc -5' |
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28757 | 3' | -49.1 | NC_006146.1 | + | 48227 | 0.66 | 0.997909 |
Target: 5'- ---aUG-AGAagGAGGGGCUGCAGAc-- -3' miRNA: 3'- uuugACgUCU--UUUCCCGACGUCUauc -5' |
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28757 | 3' | -49.1 | NC_006146.1 | + | 61829 | 0.66 | 0.997909 |
Target: 5'- -cGCUGguGggGgcaguGGGGCUGguGccGGg -3' miRNA: 3'- uuUGACguCuuU-----UCCCGACguCuaUC- -5' |
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28757 | 3' | -49.1 | NC_006146.1 | + | 157361 | 0.66 | 0.997494 |
Target: 5'- cGGGCggGCGGGGAcGGGGCUGCucGGGUc- -3' miRNA: 3'- -UUUGa-CGUCUUU-UCCCGACG--UCUAuc -5' |
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28757 | 3' | -49.1 | NC_006146.1 | + | 154283 | 0.66 | 0.997494 |
Target: 5'- cGGGCggGCGGGGAcGGGGCUGCucGGGUc- -3' miRNA: 3'- -UUUGa-CGUCUUU-UCCCGACG--UCUAuc -5' |
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28757 | 3' | -49.1 | NC_006146.1 | + | 151205 | 0.66 | 0.997494 |
Target: 5'- cGGGCggGCGGGGAcGGGGCUGCucGGGUc- -3' miRNA: 3'- -UUUGa-CGUCUUU-UCCCGACG--UCUAuc -5' |
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28757 | 3' | -49.1 | NC_006146.1 | + | 148127 | 0.66 | 0.997494 |
Target: 5'- cGGGCggGCGGGGAcGGGGCUGCucGGGUc- -3' miRNA: 3'- -UUUGa-CGUCUUU-UCCCGACG--UCUAuc -5' |
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28757 | 3' | -49.1 | NC_006146.1 | + | 145049 | 0.66 | 0.997494 |
Target: 5'- cGGGCggGCGGGGAcGGGGCUGCucGGGUc- -3' miRNA: 3'- -UUUGa-CGUCUUU-UCCCGACG--UCUAuc -5' |
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28757 | 3' | -49.1 | NC_006146.1 | + | 141971 | 0.66 | 0.997494 |
Target: 5'- cGGGCggGCGGGGAcGGGGCUGCucGGGUc- -3' miRNA: 3'- -UUUGa-CGUCUUU-UCCCGACG--UCUAuc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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