miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28757 3' -49.1 NC_006146.1 + 169178 0.67 0.995087
Target:  5'- --cCUGCAGggG-GGGCcgGCGGGg-- -3'
miRNA:   3'- uuuGACGUCuuUuCCCGa-CGUCUauc -5'
28757 3' -49.1 NC_006146.1 + 168246 0.67 0.995087
Target:  5'- --cCUGCAGggG-GGGCcgGCGGGg-- -3'
miRNA:   3'- uuuGACGUCuuUuCCCGa-CGUCUauc -5'
28757 3' -49.1 NC_006146.1 + 167314 0.67 0.995087
Target:  5'- --cCUGCAGggG-GGGCcgGCGGGg-- -3'
miRNA:   3'- uuuGACGUCuuUuCCCGa-CGUCUauc -5'
28757 3' -49.1 NC_006146.1 + 166863 0.72 0.907155
Target:  5'- gAAGCccgGCGGGAGGGGGgaGCGGAg-- -3'
miRNA:   3'- -UUUGa--CGUCUUUUCCCgaCGUCUauc -5'
28757 3' -49.1 NC_006146.1 + 166659 0.72 0.913598
Target:  5'- aGAGCgaGCGGGAAGGGGgaGCGGuGUGGc -3'
miRNA:   3'- -UUUGa-CGUCUUUUCCCgaCGUC-UAUC- -5'
28757 3' -49.1 NC_006146.1 + 165726 0.67 0.993317
Target:  5'- cAACUGCAGAGAagagagagcgGGGGUcagggagGgGGAUGGg -3'
miRNA:   3'- uUUGACGUCUUU----------UCCCGa------CgUCUAUC- -5'
28757 3' -49.1 NC_006146.1 + 162337 0.7 0.955323
Target:  5'- -uGCUGCAGccc-GGGCUGCAGcUAu -3'
miRNA:   3'- uuUGACGUCuuuuCCCGACGUCuAUc -5'
28757 3' -49.1 NC_006146.1 + 159830 0.68 0.989742
Target:  5'- gGAGCUGUcccuAGAGAGGGcGCUGUAGc--- -3'
miRNA:   3'- -UUUGACG----UCUUUUCC-CGACGUCuauc -5'
28757 3' -49.1 NC_006146.1 + 158388 0.71 0.941712
Target:  5'- cGGGCUGCGcGAAGGGGUUGCAcGAg-- -3'
miRNA:   3'- -UUUGACGUcUUUUCCCGACGU-CUauc -5'
28757 3' -49.1 NC_006146.1 + 157361 0.66 0.997494
Target:  5'- cGGGCggGCGGGGAcGGGGCUGCucGGGUc- -3'
miRNA:   3'- -UUUGa-CGUCUUU-UCCCGACG--UCUAuc -5'
28757 3' -49.1 NC_006146.1 + 155233 0.75 0.791077
Target:  5'- cAGGCUGUGGGucAGGGCgUGCAGGUGc -3'
miRNA:   3'- -UUUGACGUCUuuUCCCG-ACGUCUAUc -5'
28757 3' -49.1 NC_006146.1 + 154283 0.66 0.997494
Target:  5'- cGGGCggGCGGGGAcGGGGCUGCucGGGUc- -3'
miRNA:   3'- -UUUGa-CGUCUUU-UCCCGACG--UCUAuc -5'
28757 3' -49.1 NC_006146.1 + 151205 0.66 0.997494
Target:  5'- cGGGCggGCGGGGAcGGGGCUGCucGGGUc- -3'
miRNA:   3'- -UUUGa-CGUCUUU-UCCCGACG--UCUAuc -5'
28757 3' -49.1 NC_006146.1 + 148127 0.66 0.997494
Target:  5'- cGGGCggGCGGGGAcGGGGCUGCucGGGUc- -3'
miRNA:   3'- -UUUGa-CGUCUUU-UCCCGACG--UCUAuc -5'
28757 3' -49.1 NC_006146.1 + 145049 0.66 0.997494
Target:  5'- cGGGCggGCGGGGAcGGGGCUGCucGGGUc- -3'
miRNA:   3'- -UUUGa-CGUCUUU-UCCCGACG--UCUAuc -5'
28757 3' -49.1 NC_006146.1 + 141971 0.66 0.997494
Target:  5'- cGGGCggGCGGGGAcGGGGCUGCucGGGUc- -3'
miRNA:   3'- -UUUGa-CGUCUUU-UCCCGACG--UCUAuc -5'
28757 3' -49.1 NC_006146.1 + 140613 1.08 0.01207
Target:  5'- gAAACUGCAGAAAAGGGCUGCAGAUAGg -3'
miRNA:   3'- -UUUGACGUCUUUUCCCGACGUCUAUC- -5'
28757 3' -49.1 NC_006146.1 + 133816 0.69 0.982835
Target:  5'- cAACUGCucaGGGGAGGGGgUGaGGAUGGu -3'
miRNA:   3'- uUUGACG---UCUUUUCCCgACgUCUAUC- -5'
28757 3' -49.1 NC_006146.1 + 132075 0.67 0.994257
Target:  5'- uGAGCUGCcccAGGcucAGGGccuGGCUGCAGAUGu -3'
miRNA:   3'- -UUUGACG---UCU---UUUC---CCGACGUCUAUc -5'
28757 3' -49.1 NC_006146.1 + 131602 0.67 0.993317
Target:  5'- -uACUGUGGuaguGGGGGCUGUGGuaGUGGg -3'
miRNA:   3'- uuUGACGUCuu--UUCCCGACGUC--UAUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.