miRNA display CGI


Results 41 - 60 of 155 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28757 5' -53.8 NC_006146.1 + 22036 0.68 0.924192
Target:  5'- -cCCCUCUaguggACagagacaggguuagAGCCCUccg-GCGGCCg -3'
miRNA:   3'- cuGGGAGA-----UG--------------UCGGGAaaaaCGCCGG- -5'
28757 5' -53.8 NC_006146.1 + 22159 0.72 0.756766
Target:  5'- gGugCCUCUGgaGGCCCUggccccgcccgGUGGCCu -3'
miRNA:   3'- -CugGGAGAUg-UCGGGAaaaa-------CGCCGG- -5'
28757 5' -53.8 NC_006146.1 + 22279 0.7 0.851469
Target:  5'- cGAUCCUCcgagACuccgGGCCCcaag-GCGGCCg -3'
miRNA:   3'- -CUGGGAGa---UG----UCGGGaaaaaCGCCGG- -5'
28757 5' -53.8 NC_006146.1 + 22688 0.74 0.620312
Target:  5'- gGACCC-CgGCAGCCCgg---GUGGCCc -3'
miRNA:   3'- -CUGGGaGaUGUCGGGaaaaaCGCCGG- -5'
28757 5' -53.8 NC_006146.1 + 23089 0.67 0.93624
Target:  5'- gGACCC-CgGCGGCCCg----GUGuGCCa -3'
miRNA:   3'- -CUGGGaGaUGUCGGGaaaaaCGC-CGG- -5'
28757 5' -53.8 NC_006146.1 + 23420 0.72 0.743067
Target:  5'- uGCCCUCUG-AGCCCccUUUGCccccuggcaGGCCa -3'
miRNA:   3'- cUGGGAGAUgUCGGGaaAAACG---------CCGG- -5'
28757 5' -53.8 NC_006146.1 + 23452 0.68 0.920267
Target:  5'- uGCCCgucucggcCUACgaGGCCCUggccGUGGCCa -3'
miRNA:   3'- cUGGGa-------GAUG--UCGGGAaaaaCGCCGG- -5'
28757 5' -53.8 NC_006146.1 + 24726 0.67 0.939169
Target:  5'- -uCCCUCUACAGUCCcagaguccCGGUCu -3'
miRNA:   3'- cuGGGAGAUGUCGGGaaaaac--GCCGG- -5'
28757 5' -53.8 NC_006146.1 + 24918 0.68 0.895544
Target:  5'- cGGCCCUCgaggccucACAGCCCag---GCcaGGCCc -3'
miRNA:   3'- -CUGGGAGa-------UGUCGGGaaaaaCG--CCGG- -5'
28757 5' -53.8 NC_006146.1 + 25114 0.68 0.924192
Target:  5'- -cCCCUCUaguggACagagacaggguuagAGCCCUccg-GCGGCCg -3'
miRNA:   3'- cuGGGAGA-----UG--------------UCGGGAaaaaCGCCGG- -5'
28757 5' -53.8 NC_006146.1 + 25237 0.72 0.756766
Target:  5'- gGugCCUCUGgaGGCCCUggccccgcccgGUGGCCu -3'
miRNA:   3'- -CugGGAGAUg-UCGGGAaaaa-------CGCCGG- -5'
28757 5' -53.8 NC_006146.1 + 25357 0.7 0.851469
Target:  5'- cGAUCCUCcgagACuccgGGCCCcaag-GCGGCCg -3'
miRNA:   3'- -CUGGGAGa---UG----UCGGGaaaaaCGCCGG- -5'
28757 5' -53.8 NC_006146.1 + 25766 0.74 0.620312
Target:  5'- gGACCC-CgGCAGCCCgg---GUGGCCc -3'
miRNA:   3'- -CUGGGaGaUGUCGGGaaaaaCGCCGG- -5'
28757 5' -53.8 NC_006146.1 + 26167 0.67 0.93624
Target:  5'- gGACCC-CgGCGGCCCg----GUGuGCCa -3'
miRNA:   3'- -CUGGGaGaUGUCGGGaaaaaCGC-CGG- -5'
28757 5' -53.8 NC_006146.1 + 26498 0.72 0.743067
Target:  5'- uGCCCUCUG-AGCCCccUUUGCccccuggcaGGCCa -3'
miRNA:   3'- cUGGGAGAUgUCGGGaaAAACG---------CCGG- -5'
28757 5' -53.8 NC_006146.1 + 27804 0.67 0.939169
Target:  5'- -uCCCUCUACAGUCCcagaguccCGGUCu -3'
miRNA:   3'- cuGGGAGAUGUCGGGaaaaac--GCCGG- -5'
28757 5' -53.8 NC_006146.1 + 27995 0.7 0.826589
Target:  5'- cGGCCCUCgaggccucACAGCCCag---GCcaGGCCa -3'
miRNA:   3'- -CUGGGAGa-------UGUCGGGaaaaaCG--CCGG- -5'
28757 5' -53.8 NC_006146.1 + 28192 0.68 0.924192
Target:  5'- -cCCCUCUaguggACagagacaggguuagAGCCCUccg-GCGGCCg -3'
miRNA:   3'- cuGGGAGA-----UG--------------UCGGGAaaaaCGCCGG- -5'
28757 5' -53.8 NC_006146.1 + 28315 0.72 0.756766
Target:  5'- gGugCCUCUGgaGGCCCUggccccgcccgGUGGCCu -3'
miRNA:   3'- -CugGGAGAUg-UCGGGAaaaa-------CGCCGG- -5'
28757 5' -53.8 NC_006146.1 + 28435 0.7 0.851469
Target:  5'- cGAUCCUCcgagACuccgGGCCCcaag-GCGGCCg -3'
miRNA:   3'- -CUGGGAGa---UG----UCGGGaaaaaCGCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.