miRNA display CGI


Results 21 - 40 of 155 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28757 5' -53.8 NC_006146.1 + 15881 0.68 0.924192
Target:  5'- -cCCCUCUaguggACagagacaggguuagAGCCCUccg-GCGGCCg -3'
miRNA:   3'- cuGGGAGA-----UG--------------UCGGGAaaaaCGCCGG- -5'
28757 5' -53.8 NC_006146.1 + 16003 0.72 0.756766
Target:  5'- gGugCCUCUGgaGGCCCUggccccgcccgGUGGCCu -3'
miRNA:   3'- -CugGGAGAUg-UCGGGAaaaa-------CGCCGG- -5'
28757 5' -53.8 NC_006146.1 + 16123 0.7 0.851469
Target:  5'- cGAUCCUCcgagACuccgGGCCCcaag-GCGGCCg -3'
miRNA:   3'- -CUGGGAGa---UG----UCGGGaaaaaCGCCGG- -5'
28757 5' -53.8 NC_006146.1 + 16532 0.74 0.620312
Target:  5'- gGACCC-CgGCAGCCCgg---GUGGCCc -3'
miRNA:   3'- -CUGGGaGaUGUCGGGaaaaaCGCCGG- -5'
28757 5' -53.8 NC_006146.1 + 16934 0.67 0.93624
Target:  5'- gGACCC-CgGCGGCCCg----GUGuGCCa -3'
miRNA:   3'- -CUGGGaGaUGUCGGGaaaaaCGC-CGG- -5'
28757 5' -53.8 NC_006146.1 + 17264 0.72 0.743067
Target:  5'- uGCCCUCUG-AGCCCccUUUGCccccuggcaGGCCa -3'
miRNA:   3'- cUGGGAGAUgUCGGGaaAAACG---------CCGG- -5'
28757 5' -53.8 NC_006146.1 + 17688 0.69 0.888764
Target:  5'- cGGCaUCUacggGCGGCCCgug--GCGGCCa -3'
miRNA:   3'- -CUG-GGAga--UGUCGGGaaaaaCGCCGG- -5'
28757 5' -53.8 NC_006146.1 + 18570 0.67 0.939169
Target:  5'- -uCCCUCUACAGUCCcagaguccCGGUCu -3'
miRNA:   3'- cuGGGAGAUGUCGGGaaaaac--GCCGG- -5'
28757 5' -53.8 NC_006146.1 + 18762 0.7 0.826589
Target:  5'- cGGCCCUCgaggccucACAGCCCag---GCcaGGCCa -3'
miRNA:   3'- -CUGGGAGa-------UGUCGGGaaaaaCG--CCGG- -5'
28757 5' -53.8 NC_006146.1 + 18974 0.66 0.96506
Target:  5'- aGACagggUUAgAGCCCUccg-GCGGCCg -3'
miRNA:   3'- -CUGgga-GAUgUCGGGAaaaaCGCCGG- -5'
28757 5' -53.8 NC_006146.1 + 19081 0.72 0.756766
Target:  5'- gGugCCUCUGgaGGCCCUggccccgcccgGUGGCCu -3'
miRNA:   3'- -CugGGAGAUg-UCGGGAaaaa-------CGCCGG- -5'
28757 5' -53.8 NC_006146.1 + 19201 0.7 0.851469
Target:  5'- cGAUCCUCcgagACuccgGGCCCcaag-GCGGCCg -3'
miRNA:   3'- -CUGGGAGa---UG----UCGGGaaaaaCGCCGG- -5'
28757 5' -53.8 NC_006146.1 + 19606 0.67 0.941073
Target:  5'- uGGCCCUCcuacACGGCCCU------GGCCu -3'
miRNA:   3'- -CUGGGAGa---UGUCGGGAaaaacgCCGG- -5'
28757 5' -53.8 NC_006146.1 + 19610 0.74 0.620312
Target:  5'- gGACCC-CgGCAGCCCgg---GUGGCCc -3'
miRNA:   3'- -CUGGGaGaUGUCGGGaaaaaCGCCGG- -5'
28757 5' -53.8 NC_006146.1 + 20011 0.67 0.93624
Target:  5'- gGACCC-CgGCGGCCCg----GUGuGCCa -3'
miRNA:   3'- -CUGGGaGaUGUCGGGaaaaaCGC-CGG- -5'
28757 5' -53.8 NC_006146.1 + 20342 0.72 0.743067
Target:  5'- uGCCCUCUG-AGCCCccUUUGCccccuggcaGGCCa -3'
miRNA:   3'- cUGGGAGAUgUCGGGaaAAACG---------CCGG- -5'
28757 5' -53.8 NC_006146.1 + 20801 0.7 0.851469
Target:  5'- cGCCgUCUACGGCUucaCUggg-GUGGCCa -3'
miRNA:   3'- cUGGgAGAUGUCGG---GAaaaaCGCCGG- -5'
28757 5' -53.8 NC_006146.1 + 20902 0.69 0.874509
Target:  5'- aGGCCUUCguggaGGCCCUgagucCGGCCg -3'
miRNA:   3'- -CUGGGAGaug--UCGGGAaaaacGCCGG- -5'
28757 5' -53.8 NC_006146.1 + 21648 0.67 0.939169
Target:  5'- -uCCCUCUACAGUCCcagaguccCGGUCu -3'
miRNA:   3'- cuGGGAGAUGUCGGGaaaaac--GCCGG- -5'
28757 5' -53.8 NC_006146.1 + 21840 0.7 0.826589
Target:  5'- cGGCCCUCgaggccucACAGCCCag---GCcaGGCCa -3'
miRNA:   3'- -CUGGGAGa-------UGUCGGGaaaaaCG--CCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.