miRNA display CGI


Results 21 - 40 of 155 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28757 5' -53.8 NC_006146.1 + 28315 0.72 0.756766
Target:  5'- gGugCCUCUGgaGGCCCUggccccgcccgGUGGCCu -3'
miRNA:   3'- -CugGGAGAUg-UCGGGAaaaa-------CGCCGG- -5'
28757 5' -53.8 NC_006146.1 + 19081 0.72 0.756766
Target:  5'- gGugCCUCUGgaGGCCCUggccccgcccgGUGGCCu -3'
miRNA:   3'- -CugGGAGAUg-UCGGGAaaaa-------CGCCGG- -5'
28757 5' -53.8 NC_006146.1 + 128262 0.73 0.702938
Target:  5'- gGGCCCaCUACgugaGGCCCacggcgGCGGCCg -3'
miRNA:   3'- -CUGGGaGAUG----UCGGGaaaaa-CGCCGG- -5'
28757 5' -53.8 NC_006146.1 + 16532 0.74 0.620312
Target:  5'- gGACCC-CgGCAGCCCgg---GUGGCCc -3'
miRNA:   3'- -CUGGGaGaUGUCGGGaaaaaCGCCGG- -5'
28757 5' -53.8 NC_006146.1 + 64851 0.7 0.826589
Target:  5'- cACCUUCUGCcaggcuccaAGUCCggauggGCGGCCa -3'
miRNA:   3'- cUGGGAGAUG---------UCGGGaaaaa-CGCCGG- -5'
28757 5' -53.8 NC_006146.1 + 3091 0.7 0.817921
Target:  5'- aGACCgCUCUGgAGCUCUUcuc-CGGCCu -3'
miRNA:   3'- -CUGG-GAGAUgUCGGGAAaaacGCCGG- -5'
28757 5' -53.8 NC_006146.1 + 12926 0.72 0.756766
Target:  5'- gGugCCUCUGgaGGCCCUggccccgcccgGUGGCCu -3'
miRNA:   3'- -CugGGAGAUg-UCGGGAaaaa-------CGCCGG- -5'
28757 5' -53.8 NC_006146.1 + 13454 0.74 0.620312
Target:  5'- gGACCC-CgGCAGCCCgg---GUGGCCc -3'
miRNA:   3'- -CUGGGaGaUGUCGGGaaaaaCGCCGG- -5'
28757 5' -53.8 NC_006146.1 + 47642 0.71 0.809971
Target:  5'- aGCCgUCUcuggccGCGGCCCggcccagcgcgGCGGCCa -3'
miRNA:   3'- cUGGgAGA------UGUCGGGaaaaa------CGCCGG- -5'
28757 5' -53.8 NC_006146.1 + 93984 0.74 0.609937
Target:  5'- cACCCggCUGCAGCCCc----GCGGUCa -3'
miRNA:   3'- cUGGGa-GAUGUCGGGaaaaaCGCCGG- -5'
28757 5' -53.8 NC_006146.1 + 16003 0.72 0.756766
Target:  5'- gGugCCUCUGgaGGCCCUggccccgcccgGUGGCCu -3'
miRNA:   3'- -CugGGAGAUg-UCGGGAaaaa-------CGCCGG- -5'
28757 5' -53.8 NC_006146.1 + 96337 0.71 0.76257
Target:  5'- uGACCUUCgACAGCCCgg--UGCaGcGCCu -3'
miRNA:   3'- -CUGGGAGaUGUCGGGaaaaACG-C-CGG- -5'
28757 5' -53.8 NC_006146.1 + 23420 0.72 0.743067
Target:  5'- uGCCCUCUG-AGCCCccUUUGCccccuggcaGGCCa -3'
miRNA:   3'- cUGGGAGAUgUCGGGaaAAACG---------CCGG- -5'
28757 5' -53.8 NC_006146.1 + 14186 0.72 0.743067
Target:  5'- uGCCCUCUG-AGCCCccUUUGCccccuggcaGGCCa -3'
miRNA:   3'- cUGGGAGAUgUCGGGaaAAACG---------CCGG- -5'
28757 5' -53.8 NC_006146.1 + 28844 0.74 0.620312
Target:  5'- gGACCC-CgGCAGCCCgg---GUGGCCc -3'
miRNA:   3'- -CUGGGaGaUGUCGGGaaaaaCGCCGG- -5'
28757 5' -53.8 NC_006146.1 + 19610 0.74 0.620312
Target:  5'- gGACCC-CgGCAGCCCgg---GUGGCCc -3'
miRNA:   3'- -CUGGGaGaUGUCGGGaaaaaCGCCGG- -5'
28757 5' -53.8 NC_006146.1 + 16123 0.7 0.851469
Target:  5'- cGAUCCUCcgagACuccgGGCCCcaag-GCGGCCg -3'
miRNA:   3'- -CUGGGAGa---UG----UCGGGaaaaaCGCCGG- -5'
28757 5' -53.8 NC_006146.1 + 112994 0.7 0.843371
Target:  5'- cGCCCUCUGCAuGUCCUggacaagGC-GCCg -3'
miRNA:   3'- cUGGGAGAUGU-CGGGAaaaa---CGcCGG- -5'
28757 5' -53.8 NC_006146.1 + 18762 0.7 0.826589
Target:  5'- cGGCCCUCgaggccucACAGCCCag---GCcaGGCCa -3'
miRNA:   3'- -CUGGGAGa-------UGUCGGGaaaaaCG--CCGG- -5'
28757 5' -53.8 NC_006146.1 + 65299 0.7 0.817921
Target:  5'- gGACCUggCUGCGcuGCCUc--UUGCGGCCu -3'
miRNA:   3'- -CUGGGa-GAUGU--CGGGaaaAACGCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.