miRNA display CGI


Results 21 - 40 of 155 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28757 5' -53.8 NC_006146.1 + 20342 0.72 0.743067
Target:  5'- uGCCCUCUG-AGCCCccUUUGCccccuggcaGGCCa -3'
miRNA:   3'- cUGGGAGAUgUCGGGaaAAACG---------CCGG- -5'
28757 5' -53.8 NC_006146.1 + 17264 0.72 0.743067
Target:  5'- uGCCCUCUG-AGCCCccUUUGCccccuggcaGGCCa -3'
miRNA:   3'- cUGGGAGAUgUCGGGaaAAACG---------CCGG- -5'
28757 5' -53.8 NC_006146.1 + 14186 0.72 0.743067
Target:  5'- uGCCCUCUG-AGCCCccUUUGCccccuggcaGGCCa -3'
miRNA:   3'- cUGGGAGAUgUCGGGaaAAACG---------CCGG- -5'
28757 5' -53.8 NC_006146.1 + 29576 0.72 0.743067
Target:  5'- uGCCCUCUG-AGCCCccUUUGCccccuggcaGGCCa -3'
miRNA:   3'- cUGGGAGAUgUCGGGaaAAACG---------CCGG- -5'
28757 5' -53.8 NC_006146.1 + 132222 0.72 0.752873
Target:  5'- aGGCCUUUaagGCAGCUCUc---GCGGCCg -3'
miRNA:   3'- -CUGGGAGa--UGUCGGGAaaaaCGCCGG- -5'
28757 5' -53.8 NC_006146.1 + 12926 0.72 0.756766
Target:  5'- gGugCCUCUGgaGGCCCUggccccgcccgGUGGCCu -3'
miRNA:   3'- -CugGGAGAUg-UCGGGAaaaa-------CGCCGG- -5'
28757 5' -53.8 NC_006146.1 + 22159 0.72 0.756766
Target:  5'- gGugCCUCUGgaGGCCCUggccccgcccgGUGGCCu -3'
miRNA:   3'- -CugGGAGAUg-UCGGGAaaaa-------CGCCGG- -5'
28757 5' -53.8 NC_006146.1 + 16003 0.72 0.756766
Target:  5'- gGugCCUCUGgaGGCCCUggccccgcccgGUGGCCu -3'
miRNA:   3'- -CugGGAGAUg-UCGGGAaaaa-------CGCCGG- -5'
28757 5' -53.8 NC_006146.1 + 19081 0.72 0.756766
Target:  5'- gGugCCUCUGgaGGCCCUggccccgcccgGUGGCCu -3'
miRNA:   3'- -CugGGAGAUg-UCGGGAaaaa-------CGCCGG- -5'
28757 5' -53.8 NC_006146.1 + 28315 0.72 0.756766
Target:  5'- gGugCCUCUGgaGGCCCUggccccgcccgGUGGCCu -3'
miRNA:   3'- -CugGGAGAUg-UCGGGAaaaa-------CGCCGG- -5'
28757 5' -53.8 NC_006146.1 + 25237 0.72 0.756766
Target:  5'- gGugCCUCUGgaGGCCCUggccccgcccgGUGGCCu -3'
miRNA:   3'- -CugGGAGAUg-UCGGGAaaaa-------CGCCGG- -5'
28757 5' -53.8 NC_006146.1 + 10498 0.71 0.761606
Target:  5'- cGCCCUCUAUcgcaGGCUCUgguuugcgagacuggGCGGCCu -3'
miRNA:   3'- cUGGGAGAUG----UCGGGAaaaa-----------CGCCGG- -5'
28757 5' -53.8 NC_006146.1 + 96337 0.71 0.76257
Target:  5'- uGACCUUCgACAGCCCgg--UGCaGcGCCu -3'
miRNA:   3'- -CUGGGAGaUGUCGGGaaaaACG-C-CGG- -5'
28757 5' -53.8 NC_006146.1 + 55238 0.71 0.772148
Target:  5'- cGCCCUCaggUACGucGCCCgg---GCGGCCc -3'
miRNA:   3'- cUGGGAG---AUGU--CGGGaaaaaCGCCGG- -5'
28757 5' -53.8 NC_006146.1 + 106625 0.71 0.790908
Target:  5'- cACCCgcgauugCcGCAGCgCCUgc-UGCGGCCg -3'
miRNA:   3'- cUGGGa------GaUGUCG-GGAaaaACGCCGG- -5'
28757 5' -53.8 NC_006146.1 + 30279 0.71 0.793673
Target:  5'- cACCCuucccuaUCUGCAGCCCUUUUcUGCaguuuccccuuccagGGCUa -3'
miRNA:   3'- cUGGG-------AGAUGUCGGGAAAA-ACG---------------CCGG- -5'
28757 5' -53.8 NC_006146.1 + 137541 0.71 0.809079
Target:  5'- cGGCCCg--GCGGaCCCaccg-GCGGCCa -3'
miRNA:   3'- -CUGGGagaUGUC-GGGaaaaaCGCCGG- -5'
28757 5' -53.8 NC_006146.1 + 47642 0.71 0.809971
Target:  5'- aGCCgUCUcuggccGCGGCCCggcccagcgcgGCGGCCa -3'
miRNA:   3'- cUGGgAGA------UGUCGGGaaaaa------CGCCGG- -5'
28757 5' -53.8 NC_006146.1 + 127553 0.7 0.815286
Target:  5'- -cCCCUgccacgggcugcgcCUGCuGGCCCUgg--GCGGCCg -3'
miRNA:   3'- cuGGGA--------------GAUG-UCGGGAaaaaCGCCGG- -5'
28757 5' -53.8 NC_006146.1 + 3091 0.7 0.817921
Target:  5'- aGACCgCUCUGgAGCUCUUcuc-CGGCCu -3'
miRNA:   3'- -CUGG-GAGAUgUCGGGAAaaacGCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.