miRNA display CGI


Results 1 - 20 of 155 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28757 5' -53.8 NC_006146.1 + 140647 1.13 0.002801
Target:  5'- uGACCCUCUACAGCCCUUUUUGCGGCCa -3'
miRNA:   3'- -CUGGGAGAUGUCGGGAAAAACGCCGG- -5'
28757 5' -53.8 NC_006146.1 + 73033 0.81 0.295631
Target:  5'- aGGCCCUCguuccACGGCCCggggucgGCGGCCc -3'
miRNA:   3'- -CUGGGAGa----UGUCGGGaaaaa--CGCCGG- -5'
28757 5' -53.8 NC_006146.1 + 53350 0.77 0.450774
Target:  5'- uACCCUgaACAGCCUgaa-UGCGGCCc -3'
miRNA:   3'- cUGGGAgaUGUCGGGaaaaACGCCGG- -5'
28757 5' -53.8 NC_006146.1 + 74231 0.77 0.460119
Target:  5'- aGACCUUCUucuucaGGCCCUgc--GCGGCCg -3'
miRNA:   3'- -CUGGGAGAug----UCGGGAaaaaCGCCGG- -5'
28757 5' -53.8 NC_006146.1 + 154707 0.76 0.50829
Target:  5'- cGCCCagaUGCAGCCCaccaggGCGGCCa -3'
miRNA:   3'- cUGGGag-AUGUCGGGaaaaa-CGCCGG- -5'
28757 5' -53.8 NC_006146.1 + 93984 0.74 0.609937
Target:  5'- cACCCggCUGCAGCCCc----GCGGUCa -3'
miRNA:   3'- cUGGGa-GAUGUCGGGaaaaaCGCCGG- -5'
28757 5' -53.8 NC_006146.1 + 28844 0.74 0.620312
Target:  5'- gGACCC-CgGCAGCCCgg---GUGGCCc -3'
miRNA:   3'- -CUGGGaGaUGUCGGGaaaaaCGCCGG- -5'
28757 5' -53.8 NC_006146.1 + 22688 0.74 0.620312
Target:  5'- gGACCC-CgGCAGCCCgg---GUGGCCc -3'
miRNA:   3'- -CUGGGaGaUGUCGGGaaaaaCGCCGG- -5'
28757 5' -53.8 NC_006146.1 + 19610 0.74 0.620312
Target:  5'- gGACCC-CgGCAGCCCgg---GUGGCCc -3'
miRNA:   3'- -CUGGGaGaUGUCGGGaaaaaCGCCGG- -5'
28757 5' -53.8 NC_006146.1 + 16532 0.74 0.620312
Target:  5'- gGACCC-CgGCAGCCCgg---GUGGCCc -3'
miRNA:   3'- -CUGGGaGaUGUCGGGaaaaaCGCCGG- -5'
28757 5' -53.8 NC_006146.1 + 25766 0.74 0.620312
Target:  5'- gGACCC-CgGCAGCCCgg---GUGGCCc -3'
miRNA:   3'- -CUGGGaGaUGUCGGGaaaaaCGCCGG- -5'
28757 5' -53.8 NC_006146.1 + 13454 0.74 0.620312
Target:  5'- gGACCC-CgGCAGCCCgg---GUGGCCc -3'
miRNA:   3'- -CUGGGaGaUGUCGGGaaaaaCGCCGG- -5'
28757 5' -53.8 NC_006146.1 + 39817 0.74 0.641083
Target:  5'- cGGCCgUUgACGGCCCg----GCGGCCu -3'
miRNA:   3'- -CUGGgAGaUGUCGGGaaaaaCGCCGG- -5'
28757 5' -53.8 NC_006146.1 + 131060 0.74 0.641083
Target:  5'- aGCCCcCgcCGGCCCacugUGCGGCCg -3'
miRNA:   3'- cUGGGaGauGUCGGGaaaaACGCCGG- -5'
28757 5' -53.8 NC_006146.1 + 42089 0.73 0.682466
Target:  5'- -cCCCUCUGCcgccGCCCcucccugUGUGGCCg -3'
miRNA:   3'- cuGGGAGAUGu---CGGGaaaa---ACGCCGG- -5'
28757 5' -53.8 NC_006146.1 + 137663 0.73 0.702938
Target:  5'- cGGCCCg--GCGGaCCCgccg-GCGGCCa -3'
miRNA:   3'- -CUGGGagaUGUC-GGGaaaaaCGCCGG- -5'
28757 5' -53.8 NC_006146.1 + 128262 0.73 0.702938
Target:  5'- gGGCCCaCUACgugaGGCCCacggcgGCGGCCg -3'
miRNA:   3'- -CUGGGaGAUG----UCGGGaaaaa-CGCCGG- -5'
28757 5' -53.8 NC_006146.1 + 114714 0.72 0.723164
Target:  5'- aGACCCg----GGCCCUg---GCGGCCg -3'
miRNA:   3'- -CUGGGagaugUCGGGAaaaaCGCCGG- -5'
28757 5' -53.8 NC_006146.1 + 17264 0.72 0.743067
Target:  5'- uGCCCUCUG-AGCCCccUUUGCccccuggcaGGCCa -3'
miRNA:   3'- cUGGGAGAUgUCGGGaaAAACG---------CCGG- -5'
28757 5' -53.8 NC_006146.1 + 14186 0.72 0.743067
Target:  5'- uGCCCUCUG-AGCCCccUUUGCccccuggcaGGCCa -3'
miRNA:   3'- cUGGGAGAUgUCGGGaaAAACG---------CCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.