miRNA display CGI


Results 1 - 20 of 155 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28757 5' -53.8 NC_006146.1 + 3091 0.7 0.817921
Target:  5'- aGACCgCUCUGgAGCUCUUcuc-CGGCCu -3'
miRNA:   3'- -CUGG-GAGAUgUCGGGAAaaacGCCGG- -5'
28757 5' -53.8 NC_006146.1 + 4341 0.66 0.96826
Target:  5'- cGCUCUUUgaGCAGCUCUUcagcgacGUGGCCa -3'
miRNA:   3'- cUGGGAGA--UGUCGGGAAaaa----CGCCGG- -5'
28757 5' -53.8 NC_006146.1 + 5435 0.66 0.957995
Target:  5'- uGGCCUUCUGCcuGGCCUUccuacUGGCCa -3'
miRNA:   3'- -CUGGGAGAUG--UCGGGAaaaacGCCGG- -5'
28757 5' -53.8 NC_006146.1 + 10219 0.68 0.914451
Target:  5'- --gCCUCUAcCGGCCCUggucaugUGcCGGCUc -3'
miRNA:   3'- cugGGAGAU-GUCGGGAaaa----AC-GCCGG- -5'
28757 5' -53.8 NC_006146.1 + 10498 0.71 0.761606
Target:  5'- cGCCCUCUAUcgcaGGCUCUgguuugcgagacuggGCGGCCu -3'
miRNA:   3'- cUGGGAGAUG----UCGGGAaaaa-----------CGCCGG- -5'
28757 5' -53.8 NC_006146.1 + 11176 0.67 0.931162
Target:  5'- aGCgCCUCUACGGggggaaCCUg---GUGGCCa -3'
miRNA:   3'- cUG-GGAGAUGUCg-----GGAaaaaCGCCGG- -5'
28757 5' -53.8 NC_006146.1 + 11656 0.7 0.843371
Target:  5'- gGAUCCUCauUGCggGGUCCUcgccaUGCGGCCa -3'
miRNA:   3'- -CUGGGAG--AUG--UCGGGAaaa--ACGCCGG- -5'
28757 5' -53.8 NC_006146.1 + 11900 0.7 0.84255
Target:  5'- gGGCCCggcaaCUACgcgguggAGCaCCUggucUUUGCGGCCu -3'
miRNA:   3'- -CUGGGa----GAUG-------UCG-GGAa---AAACGCCGG- -5'
28757 5' -53.8 NC_006146.1 + 12413 0.67 0.939169
Target:  5'- -uCCCUCUACAGUCCcagaguccCGGUCu -3'
miRNA:   3'- cuGGGAGAUGUCGGGaaaaac--GCCGG- -5'
28757 5' -53.8 NC_006146.1 + 12605 0.7 0.826589
Target:  5'- cGGCCCUCgaggccucACAGCCCag---GCcaGGCCa -3'
miRNA:   3'- -CUGGGAGa-------UGUCGGGaaaaaCG--CCGG- -5'
28757 5' -53.8 NC_006146.1 + 12802 0.68 0.924192
Target:  5'- -cCCCUCUaguggACagagacaggguuagAGCCCUccg-GCGGCCg -3'
miRNA:   3'- cuGGGAGA-----UG--------------UCGGGAaaaaCGCCGG- -5'
28757 5' -53.8 NC_006146.1 + 12926 0.72 0.756766
Target:  5'- gGugCCUCUGgaGGCCCUggccccgcccgGUGGCCu -3'
miRNA:   3'- -CugGGAGAUg-UCGGGAaaaa-------CGCCGG- -5'
28757 5' -53.8 NC_006146.1 + 13045 0.7 0.851469
Target:  5'- cGAUCCUCcgagACuccgGGCCCcaag-GCGGCCg -3'
miRNA:   3'- -CUGGGAGa---UG----UCGGGaaaaaCGCCGG- -5'
28757 5' -53.8 NC_006146.1 + 13454 0.74 0.620312
Target:  5'- gGACCC-CgGCAGCCCgg---GUGGCCc -3'
miRNA:   3'- -CUGGGaGaUGUCGGGaaaaaCGCCGG- -5'
28757 5' -53.8 NC_006146.1 + 13856 0.67 0.93624
Target:  5'- gGACCC-CgGCGGCCCg----GUGuGCCa -3'
miRNA:   3'- -CUGGGaGaUGUCGGGaaaaaCGC-CGG- -5'
28757 5' -53.8 NC_006146.1 + 14186 0.72 0.743067
Target:  5'- uGCCCUCUG-AGCCCccUUUGCccccuggcaGGCCa -3'
miRNA:   3'- cUGGGAGAUgUCGGGaaAAACG---------CCGG- -5'
28757 5' -53.8 NC_006146.1 + 14344 0.67 0.931162
Target:  5'- gGGCCg-UUGCGGCCCUgcuggUGgGGUCg -3'
miRNA:   3'- -CUGGgaGAUGUCGGGAaaa--ACgCCGG- -5'
28757 5' -53.8 NC_006146.1 + 15432 0.67 0.941073
Target:  5'- uGGCCCggCUGCAGUCCUgccugGCGcaGCa -3'
miRNA:   3'- -CUGGGa-GAUGUCGGGAaaaa-CGC--CGg -5'
28757 5' -53.8 NC_006146.1 + 15492 0.67 0.939169
Target:  5'- -uCCCUCUACAGUCCcagaguccCGGUCu -3'
miRNA:   3'- cuGGGAGAUGUCGGGaaaaac--GCCGG- -5'
28757 5' -53.8 NC_006146.1 + 15684 0.7 0.826589
Target:  5'- cGGCCCUCgaggccucACAGCCCag---GCcaGGCCa -3'
miRNA:   3'- -CUGGGAGa-------UGUCGGGaaaaaCG--CCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.