miRNA display CGI


Results 1 - 20 of 155 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28757 5' -53.8 NC_006146.1 + 162330 0.68 0.902087
Target:  5'- uGCCUggugCUGCAGCCCgggcUGCaGCUa -3'
miRNA:   3'- cUGGGa---GAUGUCGGGaaaaACGcCGG- -5'
28757 5' -53.8 NC_006146.1 + 161735 0.67 0.931162
Target:  5'- aACCCUUgu-AGCCCgggggugGCGGCUg -3'
miRNA:   3'- cUGGGAGaugUCGGGaaaaa--CGCCGG- -5'
28757 5' -53.8 NC_006146.1 + 160085 0.66 0.96506
Target:  5'- aGCCUaUCUcAUGGCCCaugg-GCGGCCu -3'
miRNA:   3'- cUGGG-AGA-UGUCGGGaaaaaCGCCGG- -5'
28757 5' -53.8 NC_006146.1 + 156805 0.66 0.95412
Target:  5'- -cCCCUggACGGgCCUggg-GUGGCCg -3'
miRNA:   3'- cuGGGAgaUGUCgGGAaaaaCGCCGG- -5'
28757 5' -53.8 NC_006146.1 + 156092 0.69 0.867045
Target:  5'- uGCCCUCcucCGGCCCg----GCcGGCCu -3'
miRNA:   3'- cUGGGAGau-GUCGGGaaaaaCG-CCGG- -5'
28757 5' -53.8 NC_006146.1 + 154707 0.76 0.50829
Target:  5'- cGCCCagaUGCAGCCCaccaggGCGGCCa -3'
miRNA:   3'- cUGGGag-AUGUCGGGaaaaa-CGCCGG- -5'
28757 5' -53.8 NC_006146.1 + 153727 0.66 0.95412
Target:  5'- -cCCCUggACGGgCCUggg-GUGGCCg -3'
miRNA:   3'- cuGGGAgaUGUCgGGAaaaaCGCCGG- -5'
28757 5' -53.8 NC_006146.1 + 150650 0.66 0.95412
Target:  5'- -cCCCUggACGGgCCUggg-GUGGCCg -3'
miRNA:   3'- cuGGGAgaUGUCgGGAaaaaCGCCGG- -5'
28757 5' -53.8 NC_006146.1 + 148599 0.68 0.90839
Target:  5'- --gCCUCUGCAGCCCaagaggcacUUUGCauGCCa -3'
miRNA:   3'- cugGGAGAUGUCGGGaa-------AAACGc-CGG- -5'
28757 5' -53.8 NC_006146.1 + 147993 0.68 0.913258
Target:  5'- uGGCCCUCgUGgGGCCUUcccugcacaugUUGgGGCCu -3'
miRNA:   3'- -CUGGGAG-AUgUCGGGAaa---------AACgCCGG- -5'
28757 5' -53.8 NC_006146.1 + 147572 0.66 0.95412
Target:  5'- -cCCCUggACGGgCCUggg-GUGGCCg -3'
miRNA:   3'- cuGGGAgaUGUCgGGAaaaaCGCCGG- -5'
28757 5' -53.8 NC_006146.1 + 144828 0.68 0.920267
Target:  5'- cGGCUgUUUcCGGCCCacgUUGCGGCg -3'
miRNA:   3'- -CUGGgAGAuGUCGGGaaaAACGCCGg -5'
28757 5' -53.8 NC_006146.1 + 144494 0.66 0.95412
Target:  5'- -cCCCUggACGGgCCUggg-GUGGCCg -3'
miRNA:   3'- cuGGGAgaUGUCgGGAaaaaCGCCGG- -5'
28757 5' -53.8 NC_006146.1 + 141813 0.69 0.859363
Target:  5'- uGCCCUCUGCAcacCUCUgcUUUUGUgGGCCu -3'
miRNA:   3'- cUGGGAGAUGUc--GGGA--AAAACG-CCGG- -5'
28757 5' -53.8 NC_006146.1 + 141416 0.66 0.95412
Target:  5'- -cCCCUggACGGgCCUggg-GUGGCCg -3'
miRNA:   3'- cuGGGAgaUGUCgGGAaaaaCGCCGG- -5'
28757 5' -53.8 NC_006146.1 + 140710 0.66 0.96826
Target:  5'- cGGCCCUCUGCuGUCCU---UGCuuaauuuuaGCCc -3'
miRNA:   3'- -CUGGGAGAUGuCGGGAaaaACGc--------CGG- -5'
28757 5' -53.8 NC_006146.1 + 140647 1.13 0.002801
Target:  5'- uGACCCUCUACAGCCCUUUUUGCGGCCa -3'
miRNA:   3'- -CUGGGAGAUGUCGGGAAAAACGCCGG- -5'
28757 5' -53.8 NC_006146.1 + 137769 0.66 0.969178
Target:  5'- cACCCggagCggggcaGCGGCCCggcgaacccgccgGCGGCCa -3'
miRNA:   3'- cUGGGa---Ga-----UGUCGGGaaaaa--------CGCCGG- -5'
28757 5' -53.8 NC_006146.1 + 137663 0.73 0.702938
Target:  5'- cGGCCCg--GCGGaCCCgccg-GCGGCCa -3'
miRNA:   3'- -CUGGGagaUGUC-GGGaaaaaCGCCGG- -5'
28757 5' -53.8 NC_006146.1 + 137541 0.71 0.809079
Target:  5'- cGGCCCg--GCGGaCCCaccg-GCGGCCa -3'
miRNA:   3'- -CUGGGagaUGUC-GGGaaaaaCGCCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.