miRNA display CGI


Results 21 - 40 of 155 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28757 5' -53.8 NC_006146.1 + 5435 0.66 0.957995
Target:  5'- uGGCCUUCUGCcuGGCCUUccuacUGGCCa -3'
miRNA:   3'- -CUGGGAGAUG--UCGGGAaaaacGCCGG- -5'
28757 5' -53.8 NC_006146.1 + 114508 0.66 0.956473
Target:  5'- cACCCUCgcgaGCGGCCaCgcuuacccgGCGGCg -3'
miRNA:   3'- cUGGGAGa---UGUCGG-Gaaaaa----CGCCGg -5'
28757 5' -53.8 NC_006146.1 + 102113 0.66 0.95412
Target:  5'- -uCCCaCUGCcauccacccAGCCUUUUUUGCagGGCCu -3'
miRNA:   3'- cuGGGaGAUG---------UCGGGAAAAACG--CCGG- -5'
28757 5' -53.8 NC_006146.1 + 147572 0.66 0.95412
Target:  5'- -cCCCUggACGGgCCUggg-GUGGCCg -3'
miRNA:   3'- cuGGGAgaUGUCgGGAaaaaCGCCGG- -5'
28757 5' -53.8 NC_006146.1 + 104192 0.66 0.95412
Target:  5'- gGGCCgUCUGC-GCCCccac-GgGGCCg -3'
miRNA:   3'- -CUGGgAGAUGuCGGGaaaaaCgCCGG- -5'
28757 5' -53.8 NC_006146.1 + 153727 0.66 0.95412
Target:  5'- -cCCCUggACGGgCCUggg-GUGGCCg -3'
miRNA:   3'- cuGGGAgaUGUCgGGAaaaaCGCCGG- -5'
28757 5' -53.8 NC_006146.1 + 141416 0.66 0.95412
Target:  5'- -cCCCUggACGGgCCUggg-GUGGCCg -3'
miRNA:   3'- cuGGGAgaUGUCgGGAaaaaCGCCGG- -5'
28757 5' -53.8 NC_006146.1 + 150650 0.66 0.95412
Target:  5'- -cCCCUggACGGgCCUggg-GUGGCCg -3'
miRNA:   3'- cuGGGAgaUGUCgGGAaaaaCGCCGG- -5'
28757 5' -53.8 NC_006146.1 + 66697 0.66 0.95412
Target:  5'- aACCCUCggcuUGCGGCCCcgug-GgGGCg -3'
miRNA:   3'- cUGGGAG----AUGUCGGGaaaaaCgCCGg -5'
28757 5' -53.8 NC_006146.1 + 129327 0.66 0.95412
Target:  5'- --gCCUCggcCAGCCaguag-GCGGCCg -3'
miRNA:   3'- cugGGAGau-GUCGGgaaaaaCGCCGG- -5'
28757 5' -53.8 NC_006146.1 + 156805 0.66 0.95412
Target:  5'- -cCCCUggACGGgCCUggg-GUGGCCg -3'
miRNA:   3'- cuGGGAgaUGUCgGGAaaaaCGCCGG- -5'
28757 5' -53.8 NC_006146.1 + 144494 0.66 0.95412
Target:  5'- -cCCCUggACGGgCCUggg-GUGGCCg -3'
miRNA:   3'- cuGGGAgaUGUCgGGAaaaaCGCCGG- -5'
28757 5' -53.8 NC_006146.1 + 128070 0.67 0.95001
Target:  5'- cGGCCCUCga-GGCCCUgauccUGGUCu -3'
miRNA:   3'- -CUGGGAGaugUCGGGAaaaacGCCGG- -5'
28757 5' -53.8 NC_006146.1 + 40002 0.67 0.95001
Target:  5'- uGGCCCg--GCAGCCUUUgac-CGGUCa -3'
miRNA:   3'- -CUGGGagaUGUCGGGAAaaacGCCGG- -5'
28757 5' -53.8 NC_006146.1 + 41045 0.67 0.95001
Target:  5'- -cCCCgUCcgcgGCGGCCCUg---GgGGCCu -3'
miRNA:   3'- cuGGG-AGa---UGUCGGGAaaaaCgCCGG- -5'
28757 5' -53.8 NC_006146.1 + 62704 0.67 0.95001
Target:  5'- cGGCCa-CUACAGCCg----UGuCGGCCg -3'
miRNA:   3'- -CUGGgaGAUGUCGGgaaaaAC-GCCGG- -5'
28757 5' -53.8 NC_006146.1 + 117368 0.67 0.945662
Target:  5'- aGCCC-CU-CGGUCCUc---GCGGCCu -3'
miRNA:   3'- cUGGGaGAuGUCGGGAaaaaCGCCGG- -5'
28757 5' -53.8 NC_006146.1 + 44717 0.67 0.945662
Target:  5'- uGGCCCccgCUGgcCGGCCUgaugcgGUGGCCg -3'
miRNA:   3'- -CUGGGa--GAU--GUCGGGaaaaa-CGCCGG- -5'
28757 5' -53.8 NC_006146.1 + 95203 0.67 0.942937
Target:  5'- -uCCCUgcgCUGCAGCuCCUccagggaggcguccgUUgaGCGGCCa -3'
miRNA:   3'- cuGGGA---GAUGUCG-GGA---------------AAaaCGCCGG- -5'
28757 5' -53.8 NC_006146.1 + 19606 0.67 0.941073
Target:  5'- uGGCCCUCcuacACGGCCCU------GGCCu -3'
miRNA:   3'- -CUGGGAGa---UGUCGGGAaaaacgCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.