miRNA display CGI


Results 41 - 60 of 155 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28757 5' -53.8 NC_006146.1 + 15432 0.67 0.941073
Target:  5'- uGGCCCggCUGCAGUCCUgccugGCGcaGCa -3'
miRNA:   3'- -CUGGGa-GAUGUCGGGAaaaa-CGC--CGg -5'
28757 5' -53.8 NC_006146.1 + 27804 0.67 0.939169
Target:  5'- -uCCCUCUACAGUCCcagaguccCGGUCu -3'
miRNA:   3'- cuGGGAGAUGUCGGGaaaaac--GCCGG- -5'
28757 5' -53.8 NC_006146.1 + 15492 0.67 0.939169
Target:  5'- -uCCCUCUACAGUCCcagaguccCGGUCu -3'
miRNA:   3'- cuGGGAGAUGUCGGGaaaaac--GCCGG- -5'
28757 5' -53.8 NC_006146.1 + 12413 0.67 0.939169
Target:  5'- -uCCCUCUACAGUCCcagaguccCGGUCu -3'
miRNA:   3'- cuGGGAGAUGUCGGGaaaaac--GCCGG- -5'
28757 5' -53.8 NC_006146.1 + 18570 0.67 0.939169
Target:  5'- -uCCCUCUACAGUCCcagaguccCGGUCu -3'
miRNA:   3'- cuGGGAGAUGUCGGGaaaaac--GCCGG- -5'
28757 5' -53.8 NC_006146.1 + 24726 0.67 0.939169
Target:  5'- -uCCCUCUACAGUCCcagaguccCGGUCu -3'
miRNA:   3'- cuGGGAGAUGUCGGGaaaaac--GCCGG- -5'
28757 5' -53.8 NC_006146.1 + 21648 0.67 0.939169
Target:  5'- -uCCCUCUACAGUCCcagaguccCGGUCu -3'
miRNA:   3'- cuGGGAGAUGUCGGGaaaaac--GCCGG- -5'
28757 5' -53.8 NC_006146.1 + 88839 0.67 0.93624
Target:  5'- cACCUgaaGCAgGCCCUUg--GUGGCCa -3'
miRNA:   3'- cUGGGagaUGU-CGGGAAaaaCGCCGG- -5'
28757 5' -53.8 NC_006146.1 + 29245 0.67 0.93624
Target:  5'- gGACCC-CgGCGGCCCg----GUGuGCCa -3'
miRNA:   3'- -CUGGGaGaUGUCGGGaaaaaCGC-CGG- -5'
28757 5' -53.8 NC_006146.1 + 43457 0.67 0.93624
Target:  5'- cGCCacaUCUggagcgGCAGCCUccucgGCGGCCg -3'
miRNA:   3'- cUGGg--AGA------UGUCGGGaaaaaCGCCGG- -5'
28757 5' -53.8 NC_006146.1 + 26167 0.67 0.93624
Target:  5'- gGACCC-CgGCGGCCCg----GUGuGCCa -3'
miRNA:   3'- -CUGGGaGaUGUCGGGaaaaaCGC-CGG- -5'
28757 5' -53.8 NC_006146.1 + 42464 0.67 0.93624
Target:  5'- -cCCCUCcc--GCCCggUcUGCGGCCc -3'
miRNA:   3'- cuGGGAGauguCGGGaaAaACGCCGG- -5'
28757 5' -53.8 NC_006146.1 + 20011 0.67 0.93624
Target:  5'- gGACCC-CgGCGGCCCg----GUGuGCCa -3'
miRNA:   3'- -CUGGGaGaUGUCGGGaaaaaCGC-CGG- -5'
28757 5' -53.8 NC_006146.1 + 76989 0.67 0.93624
Target:  5'- cGCCUUCUAC-GCCUccg-UGCuGGCCc -3'
miRNA:   3'- cUGGGAGAUGuCGGGaaaaACG-CCGG- -5'
28757 5' -53.8 NC_006146.1 + 23089 0.67 0.93624
Target:  5'- gGACCC-CgGCGGCCCg----GUGuGCCa -3'
miRNA:   3'- -CUGGGaGaUGUCGGGaaaaaCGC-CGG- -5'
28757 5' -53.8 NC_006146.1 + 13856 0.67 0.93624
Target:  5'- gGACCC-CgGCGGCCCg----GUGuGCCa -3'
miRNA:   3'- -CUGGGaGaUGUCGGGaaaaaCGC-CGG- -5'
28757 5' -53.8 NC_006146.1 + 16934 0.67 0.93624
Target:  5'- gGACCC-CgGCGGCCCg----GUGuGCCa -3'
miRNA:   3'- -CUGGGaGaUGUCGGGaaaaaCGC-CGG- -5'
28757 5' -53.8 NC_006146.1 + 74827 0.67 0.93168
Target:  5'- aGGCUCUUaauccuggugUGCAGCCCUgggugaugggcuucUUGaCGGCCg -3'
miRNA:   3'- -CUGGGAG----------AUGUCGGGAaa------------AAC-GCCGG- -5'
28757 5' -53.8 NC_006146.1 + 11176 0.67 0.931162
Target:  5'- aGCgCCUCUACGGggggaaCCUg---GUGGCCa -3'
miRNA:   3'- cUG-GGAGAUGUCg-----GGAaaaaCGCCGG- -5'
28757 5' -53.8 NC_006146.1 + 14344 0.67 0.931162
Target:  5'- gGGCCg-UUGCGGCCCUgcuggUGgGGUCg -3'
miRNA:   3'- -CUGGgaGAUGUCGGGAaaa--ACgCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.