miRNA display CGI


Results 21 - 40 of 155 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28757 5' -53.8 NC_006146.1 + 140710 0.66 0.96826
Target:  5'- cGGCCCUCUGCuGUCCU---UGCuuaauuuuaGCCc -3'
miRNA:   3'- -CUGGGAGAUGuCGGGAaaaACGc--------CGG- -5'
28757 5' -53.8 NC_006146.1 + 137769 0.66 0.969178
Target:  5'- cACCCggagCggggcaGCGGCCCggcgaacccgccgGCGGCCa -3'
miRNA:   3'- cUGGGa---Ga-----UGUCGGGaaaaa--------CGCCGG- -5'
28757 5' -53.8 NC_006146.1 + 160085 0.66 0.96506
Target:  5'- aGCCUaUCUcAUGGCCCaugg-GCGGCCu -3'
miRNA:   3'- cUGGG-AGA-UGUCGGGaaaaaCGCCGG- -5'
28757 5' -53.8 NC_006146.1 + 128228 0.66 0.96506
Target:  5'- --gCCUCagGCAGCCCaccgcggGCGaGCCg -3'
miRNA:   3'- cugGGAGa-UGUCGGGaaaaa--CGC-CGG- -5'
28757 5' -53.8 NC_006146.1 + 123128 0.66 0.96506
Target:  5'- gGGCUUUCagACGGCCCUg---GaGGCCg -3'
miRNA:   3'- -CUGGGAGa-UGUCGGGAaaaaCgCCGG- -5'
28757 5' -53.8 NC_006146.1 + 61258 0.66 0.957995
Target:  5'- aGACCCUCUucagcgaucggGCuggucucacgggGGCCUgucgcgugUUUGCGGCg -3'
miRNA:   3'- -CUGGGAGA-----------UG------------UCGGGaa------AAACGCCGg -5'
28757 5' -53.8 NC_006146.1 + 89062 0.66 0.957995
Target:  5'- aGCCCggguaUGgAGCCUgcuggugUUGUGGCCa -3'
miRNA:   3'- cUGGGag---AUgUCGGGaaa----AACGCCGG- -5'
28757 5' -53.8 NC_006146.1 + 127141 0.66 0.96093
Target:  5'- -cCCCUCUGCGGCCCacuccucucUGUccGCCg -3'
miRNA:   3'- cuGGGAGAUGUCGGGaaaa-----ACGc-CGG- -5'
28757 5' -53.8 NC_006146.1 + 50067 0.66 0.96164
Target:  5'- aGGCCCUCcaggaAGCgCUUg-UGCGGCa -3'
miRNA:   3'- -CUGGGAGaug--UCGgGAAaaACGCCGg -5'
28757 5' -53.8 NC_006146.1 + 122636 0.66 0.963035
Target:  5'- gGGCCCUCUuucgcGCcaggacggcggcgggGGCCCUccgcGCGGCg -3'
miRNA:   3'- -CUGGGAGA-----UG---------------UCGGGAaaaaCGCCGg -5'
28757 5' -53.8 NC_006146.1 + 102311 0.66 0.96506
Target:  5'- cGCCCacCUGCAcGCCCgggg-GCaGGCCc -3'
miRNA:   3'- cUGGGa-GAUGU-CGGGaaaaaCG-CCGG- -5'
28757 5' -53.8 NC_006146.1 + 71902 0.66 0.96826
Target:  5'- gGACCCUCcugcgcGCGGCCuCUgaccUG-GGCCu -3'
miRNA:   3'- -CUGGGAGa-----UGUCGG-GAaaa-ACgCCGG- -5'
28757 5' -53.8 NC_006146.1 + 88839 0.67 0.93624
Target:  5'- cACCUgaaGCAgGCCCUUg--GUGGCCa -3'
miRNA:   3'- cUGGGagaUGU-CGGGAAaaaCGCCGG- -5'
28757 5' -53.8 NC_006146.1 + 13856 0.67 0.93624
Target:  5'- gGACCC-CgGCGGCCCg----GUGuGCCa -3'
miRNA:   3'- -CUGGGaGaUGUCGGGaaaaaCGC-CGG- -5'
28757 5' -53.8 NC_006146.1 + 161735 0.67 0.931162
Target:  5'- aACCCUUgu-AGCCCgggggugGCGGCUg -3'
miRNA:   3'- cUGGGAGaugUCGGGaaaaa--CGCCGG- -5'
28757 5' -53.8 NC_006146.1 + 74827 0.67 0.93168
Target:  5'- aGGCUCUUaauccuggugUGCAGCCCUgggugaugggcuucUUGaCGGCCg -3'
miRNA:   3'- -CUGGGAG----------AUGUCGGGAaa------------AAC-GCCGG- -5'
28757 5' -53.8 NC_006146.1 + 15432 0.67 0.941073
Target:  5'- uGGCCCggCUGCAGUCCUgccugGCGcaGCa -3'
miRNA:   3'- -CUGGGa-GAUGUCGGGAaaaa-CGC--CGg -5'
28757 5' -53.8 NC_006146.1 + 19606 0.67 0.941073
Target:  5'- uGGCCCUCcuacACGGCCCU------GGCCu -3'
miRNA:   3'- -CUGGGAGa---UGUCGGGAaaaacgCCGG- -5'
28757 5' -53.8 NC_006146.1 + 117368 0.67 0.945662
Target:  5'- aGCCC-CU-CGGUCCUc---GCGGCCu -3'
miRNA:   3'- cUGGGaGAuGUCGGGAaaaaCGCCGG- -5'
28757 5' -53.8 NC_006146.1 + 41045 0.67 0.95001
Target:  5'- -cCCCgUCcgcgGCGGCCCUg---GgGGCCu -3'
miRNA:   3'- cuGGG-AGa---UGUCGGGAaaaaCgCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.