miRNA display CGI


Results 41 - 60 of 140 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28760 3' -51 NC_006146.1 + 154885 0.66 0.993957
Target:  5'- cCCGucggggGGCAgGGCCUcgcCCGGGcugACCGCg -3'
miRNA:   3'- -GGUua----UCGUaCUGGA---GGUCCa--UGGUG- -5'
28760 3' -51 NC_006146.1 + 138908 0.66 0.993018
Target:  5'- uCCuccUAGCGUGucgccuGCCUCCGGGaugcAUCACu -3'
miRNA:   3'- -GGuu-AUCGUAC------UGGAGGUCCa---UGGUG- -5'
28760 3' -51 NC_006146.1 + 49565 0.66 0.993018
Target:  5'- gCCAGgcccAGCAUGGCCucgauguccUCCAGG-AUgACg -3'
miRNA:   3'- -GGUUa---UCGUACUGG---------AGGUCCaUGgUG- -5'
28760 3' -51 NC_006146.1 + 117479 0.66 0.992918
Target:  5'- aCCAccAGCAgauucauaugauuUGGCCUCCuGGagGCCAg -3'
miRNA:   3'- -GGUuaUCGU-------------ACUGGAGGuCCa-UGGUg -5'
28760 3' -51 NC_006146.1 + 39145 0.66 0.992077
Target:  5'- aCGAUAGCAUGGuggccggguccuccCagcagguccgugucuCUCCAGGUGCC-Ca -3'
miRNA:   3'- gGUUAUCGUACU--------------G---------------GAGGUCCAUGGuG- -5'
28760 3' -51 NC_006146.1 + 149773 0.66 0.992077
Target:  5'- aUCA--GGCAggagaaggucuucucGGCCUCCAGGgagauggggGCCACa -3'
miRNA:   3'- -GGUuaUCGUa--------------CUGGAGGUCCa--------UGGUG- -5'
28760 3' -51 NC_006146.1 + 69593 0.66 0.991967
Target:  5'- gCCAGguccuggGGCAgcgaGACgUCCAGGc-CCACg -3'
miRNA:   3'- -GGUUa------UCGUa---CUGgAGGUCCauGGUG- -5'
28760 3' -51 NC_006146.1 + 95943 0.66 0.991855
Target:  5'- aCCGu--GCGUGACCUgcugaCCaccaacaucuaccGGGUGCUACa -3'
miRNA:   3'- -GGUuauCGUACUGGA-----GG-------------UCCAUGGUG- -5'
28760 3' -51 NC_006146.1 + 130944 0.67 0.990793
Target:  5'- uUAAUAGCAggGACC-CgGGGUGCUg- -3'
miRNA:   3'- gGUUAUCGUa-CUGGaGgUCCAUGGug -5'
28760 3' -51 NC_006146.1 + 99077 0.67 0.990793
Target:  5'- gUAGUGGUGgagGGCCcgcagCCAGGU-CCGCa -3'
miRNA:   3'- gGUUAUCGUa--CUGGa----GGUCCAuGGUG- -5'
28760 3' -51 NC_006146.1 + 89099 0.67 0.990793
Target:  5'- aCCGAUgcuaccGGCAcuGCC-CCAGGUGgCACc -3'
miRNA:   3'- -GGUUA------UCGUacUGGaGGUCCAUgGUG- -5'
28760 3' -51 NC_006146.1 + 137584 0.67 0.989489
Target:  5'- cCCGGUccuggAGCucgGGCCgggggCCGGGUGCCc- -3'
miRNA:   3'- -GGUUA-----UCGua-CUGGa----GGUCCAUGGug -5'
28760 3' -51 NC_006146.1 + 56655 0.67 0.989489
Target:  5'- aCUAcgAGC-UGGcCCUCCcugAGGUGCCGg -3'
miRNA:   3'- -GGUuaUCGuACU-GGAGG---UCCAUGGUg -5'
28760 3' -51 NC_006146.1 + 53888 0.67 0.989489
Target:  5'- cCCGuagGGCGUaGCCcaggUCCAGGgcCCGCu -3'
miRNA:   3'- -GGUua-UCGUAcUGG----AGGUCCauGGUG- -5'
28760 3' -51 NC_006146.1 + 67216 0.67 0.988044
Target:  5'- gCCGGUcGCcUGGCCggCCAGGcacaggaaGCCACg -3'
miRNA:   3'- -GGUUAuCGuACUGGa-GGUCCa-------UGGUG- -5'
28760 3' -51 NC_006146.1 + 6432 0.67 0.988044
Target:  5'- -aAAUGGUAgaGACC-CUAGGUugCGCg -3'
miRNA:   3'- ggUUAUCGUa-CUGGaGGUCCAugGUG- -5'
28760 3' -51 NC_006146.1 + 55168 0.67 0.986451
Target:  5'- gCAggGGgGUGACCgcgucCCAGGcugcgGCCGCg -3'
miRNA:   3'- gGUuaUCgUACUGGa----GGUCCa----UGGUG- -5'
28760 3' -51 NC_006146.1 + 4518 0.67 0.986451
Target:  5'- gCCAGcggGGgGUGACCaUCUcGGUGCCGg -3'
miRNA:   3'- -GGUUa--UCgUACUGG-AGGuCCAUGGUg -5'
28760 3' -51 NC_006146.1 + 143075 0.67 0.986451
Target:  5'- uCCAAUAGCAUGAaaggCGGGUaGCCGa -3'
miRNA:   3'- -GGUUAUCGUACUggagGUCCA-UGGUg -5'
28760 3' -51 NC_006146.1 + 129055 0.67 0.986451
Target:  5'- cCCGGUAGCcccUGGCCacggcCCGGGUGuuuUCACa -3'
miRNA:   3'- -GGUUAUCGu--ACUGGa----GGUCCAU---GGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.