Results 21 - 40 of 140 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28760 | 3' | -51 | NC_006146.1 | + | 136933 | 0.66 | 0.994791 |
Target: 5'- cCCGGUccuggAGCucggGGCCgggggCCGGGUGCCc- -3' miRNA: 3'- -GGUUA-----UCGua--CUGGa----GGUCCAUGGug -5' |
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28760 | 3' | -51 | NC_006146.1 | + | 137026 | 0.66 | 0.994791 |
Target: 5'- cCCGGUccuggAGCucggGGCCgggggCCGGGUGCCc- -3' miRNA: 3'- -GGUUA-----UCGua--CUGGa----GGUCCAUGGug -5' |
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28760 | 3' | -51 | NC_006146.1 | + | 103727 | 0.66 | 0.994791 |
Target: 5'- cCCAAggAGCAguuCCUCCcGGacGCCGCg -3' miRNA: 3'- -GGUUa-UCGUacuGGAGGuCCa-UGGUG- -5' |
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28760 | 3' | -51 | NC_006146.1 | + | 17200 | 0.66 | 0.994791 |
Target: 5'- aCCAu--GCAcGAgaaguacgaggcCCUCCAGG-ACCGCu -3' miRNA: 3'- -GGUuauCGUaCU------------GGAGGUCCaUGGUG- -5' |
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28760 | 3' | -51 | NC_006146.1 | + | 16958 | 0.66 | 0.994791 |
Target: 5'- cCCAAcgggAGCGgcgGGCCUUCcuggacaaGGGUACCuACa -3' miRNA: 3'- -GGUUa---UCGUa--CUGGAGG--------UCCAUGG-UG- -5' |
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28760 | 3' | -51 | NC_006146.1 | + | 136097 | 0.66 | 0.994791 |
Target: 5'- cCCGGUccuggAGCucggGGCCgggggCCGGGUGCCc- -3' miRNA: 3'- -GGUUA-----UCGua--CUGGa----GGUCCAUGGug -5' |
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28760 | 3' | -51 | NC_006146.1 | + | 137119 | 0.66 | 0.994791 |
Target: 5'- cCCGGUccuggAGCucggGGCCgggggCCGGGUGCCc- -3' miRNA: 3'- -GGUUA-----UCGua--CUGGa----GGUCCAUGGug -5' |
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28760 | 3' | -51 | NC_006146.1 | + | 136655 | 0.66 | 0.994791 |
Target: 5'- cCCGGUccuggAGCucggGGCCgggggCCGGGUGCCc- -3' miRNA: 3'- -GGUUA-----UCGua--CUGGa----GGUCCAUGGug -5' |
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28760 | 3' | -51 | NC_006146.1 | + | 135540 | 0.66 | 0.994791 |
Target: 5'- cCCGGUccuggAGCucggGGCCgggggCCGGGUGCCc- -3' miRNA: 3'- -GGUUA-----UCGua--CUGGa----GGUCCAUGGug -5' |
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28760 | 3' | -51 | NC_006146.1 | + | 109893 | 0.66 | 0.994791 |
Target: 5'- gCGAUcGGcCGUGGCCUCCAGaaACUGCc -3' miRNA: 3'- gGUUA-UC-GUACUGGAGGUCcaUGGUG- -5' |
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28760 | 3' | -51 | NC_006146.1 | + | 137212 | 0.66 | 0.994791 |
Target: 5'- cCCGGUccuggAGCucggGGCCgggggCCGGGUGCCc- -3' miRNA: 3'- -GGUUA-----UCGua--CUGGa----GGUCCAUGGug -5' |
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28760 | 3' | -51 | NC_006146.1 | + | 137491 | 0.66 | 0.994791 |
Target: 5'- cCCGGUccuggAGCucggGGCCgggggCCGGGUGCCc- -3' miRNA: 3'- -GGUUA-----UCGua--CUGGa----GGUCCAUGGug -5' |
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28760 | 3' | -51 | NC_006146.1 | + | 135447 | 0.66 | 0.994791 |
Target: 5'- cCCGGUccuggAGCucggGGCCgggggCCGGGUGCCc- -3' miRNA: 3'- -GGUUA-----UCGua--CUGGa----GGUCCAUGGug -5' |
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28760 | 3' | -51 | NC_006146.1 | + | 135633 | 0.66 | 0.994791 |
Target: 5'- cCCGGUccuggAGCucggGGCCgggggCCGGGUGCCc- -3' miRNA: 3'- -GGUUA-----UCGua--CUGGa----GGUCCAUGGug -5' |
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28760 | 3' | -51 | NC_006146.1 | + | 113041 | 0.66 | 0.993957 |
Target: 5'- gCCA--GGaCGUcGGCCUCgGGGU-CCACg -3' miRNA: 3'- -GGUuaUC-GUA-CUGGAGgUCCAuGGUG- -5' |
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28760 | 3' | -51 | NC_006146.1 | + | 117052 | 0.66 | 0.993957 |
Target: 5'- ----cAGCGUcgccuaccGCCUCCGGG-ACCACa -3' miRNA: 3'- gguuaUCGUAc-------UGGAGGUCCaUGGUG- -5' |
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28760 | 3' | -51 | NC_006146.1 | + | 154885 | 0.66 | 0.993957 |
Target: 5'- cCCGucggggGGCAgGGCCUcgcCCGGGcugACCGCg -3' miRNA: 3'- -GGUua----UCGUaCUGGA---GGUCCa--UGGUG- -5' |
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28760 | 3' | -51 | NC_006146.1 | + | 23586 | 0.66 | 0.993957 |
Target: 5'- cCCAGcuGCGU--CUUCCAGGUGCaCGCu -3' miRNA: 3'- -GGUUauCGUAcuGGAGGUCCAUG-GUG- -5' |
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28760 | 3' | -51 | NC_006146.1 | + | 71327 | 0.66 | 0.993957 |
Target: 5'- uUCGGUGGUAacauUGGCCUUUccaccugcugGGGUGCCAg -3' miRNA: 3'- -GGUUAUCGU----ACUGGAGG----------UCCAUGGUg -5' |
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28760 | 3' | -51 | NC_006146.1 | + | 109264 | 0.66 | 0.993957 |
Target: 5'- uCCAAUAGaAUGugCUUCAGGUcguaGCUg- -3' miRNA: 3'- -GGUUAUCgUACugGAGGUCCA----UGGug -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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