miRNA display CGI


Results 21 - 40 of 140 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28760 3' -51 NC_006146.1 + 136533 0.73 0.837973
Target:  5'- -gGGUGGCcgGGCCgcugCCGGGU-CCGCu -3'
miRNA:   3'- ggUUAUCGuaCUGGa---GGUCCAuGGUG- -5'
28760 3' -51 NC_006146.1 + 136440 0.73 0.837973
Target:  5'- -gGGUGGCcgGGCCgcugCCGGGU-CCGCu -3'
miRNA:   3'- ggUUAUCGuaCUGGa---GGUCCAuGGUG- -5'
28760 3' -51 NC_006146.1 + 135975 0.73 0.837973
Target:  5'- -gGGUGGCcgGGCCgcugCCGGGU-CCGCu -3'
miRNA:   3'- ggUUAUCGuaCUGGa---GGUCCAuGGUG- -5'
28760 3' -51 NC_006146.1 + 135511 0.73 0.837973
Target:  5'- -gGGUGGCcgGGCCgcugCCGGGU-CCGCu -3'
miRNA:   3'- ggUUAUCGuaCUGGa---GGUCCAuGGUG- -5'
28760 3' -51 NC_006146.1 + 132738 0.71 0.90518
Target:  5'- cCCAGUAGCcccgGuuCUCCGGGgccggaUGCCGCg -3'
miRNA:   3'- -GGUUAUCGua--CugGAGGUCC------AUGGUG- -5'
28760 3' -51 NC_006146.1 + 137090 0.73 0.837973
Target:  5'- -gGGUGGCcgGGCCgcugCCGGGU-CCGCu -3'
miRNA:   3'- ggUUAUCGuaCUGGa---GGUCCAuGGUG- -5'
28760 3' -51 NC_006146.1 + 136254 0.73 0.837973
Target:  5'- -gGGUGGCcgGGCCgcugCCGGGU-CCGCu -3'
miRNA:   3'- ggUUAUCGuaCUGGa---GGUCCAuGGUG- -5'
28760 3' -51 NC_006146.1 + 135418 0.73 0.837973
Target:  5'- -gGGUGGCcgGGCCgcugCCGGGU-CCGCu -3'
miRNA:   3'- ggUUAUCGuaCUGGa---GGUCCAuGGUG- -5'
28760 3' -51 NC_006146.1 + 136997 0.73 0.837973
Target:  5'- -gGGUGGCcgGGCCgcugCCGGGU-CCGCu -3'
miRNA:   3'- ggUUAUCGuaCUGGa---GGUCCAuGGUG- -5'
28760 3' -51 NC_006146.1 + 135325 0.73 0.837973
Target:  5'- -gGGUGGCcgGGCCgcugCCGGGU-CCGCu -3'
miRNA:   3'- ggUUAUCGuaCUGGa---GGUCCAuGGUG- -5'
28760 3' -51 NC_006146.1 + 136347 0.73 0.837973
Target:  5'- -gGGUGGCcgGGCCgcugCCGGGU-CCGCu -3'
miRNA:   3'- ggUUAUCGuaCUGGa---GGUCCAuGGUG- -5'
28760 3' -51 NC_006146.1 + 136626 0.73 0.837973
Target:  5'- -gGGUGGCcgGGCCgcugCCGGGU-CCGCu -3'
miRNA:   3'- ggUUAUCGuaCUGGa---GGUCCAuGGUG- -5'
28760 3' -51 NC_006146.1 + 136161 0.73 0.837973
Target:  5'- -gGGUGGCcgGGCCgcugCCGGGU-CCGCu -3'
miRNA:   3'- ggUUAUCGuaCUGGa---GGUCCAuGGUG- -5'
28760 3' -51 NC_006146.1 + 136068 0.73 0.837973
Target:  5'- -gGGUGGCcgGGCCgcugCCGGGU-CCGCu -3'
miRNA:   3'- ggUUAUCGuaCUGGa---GGUCCAuGGUG- -5'
28760 3' -51 NC_006146.1 + 135882 0.73 0.837973
Target:  5'- -gGGUGGCcgGGCCgcugCCGGGU-CCGCu -3'
miRNA:   3'- ggUUAUCGuaCUGGa---GGUCCAuGGUG- -5'
28760 3' -51 NC_006146.1 + 135604 0.73 0.837973
Target:  5'- -gGGUGGCcgGGCCgcugCCGGGU-CCGCu -3'
miRNA:   3'- ggUUAUCGuaCUGGa---GGUCCAuGGUG- -5'
28760 3' -51 NC_006146.1 + 18348 0.7 0.939066
Target:  5'- aCCAGUaagGGUAgguaacuucACCUCCAGGgcCCACa -3'
miRNA:   3'- -GGUUA---UCGUac-------UGGAGGUCCauGGUG- -5'
28760 3' -51 NC_006146.1 + 127627 0.7 0.928784
Target:  5'- aCCu---GCcgGACCUCCAGG--CCGCc -3'
miRNA:   3'- -GGuuauCGuaCUGGAGGUCCauGGUG- -5'
28760 3' -51 NC_006146.1 + 137462 0.73 0.837973
Target:  5'- -gGGUGGCcgGGCCgcugCCGGGU-CCGCu -3'
miRNA:   3'- ggUUAUCGuaCUGGa---GGUCCAuGGUG- -5'
28760 3' -51 NC_006146.1 + 137183 0.73 0.837973
Target:  5'- -gGGUGGCcgGGCCgcugCCGGGU-CCGCu -3'
miRNA:   3'- ggUUAUCGuaCUGGa---GGUCCAuGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.