miRNA display CGI


Results 1 - 20 of 140 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28760 3' -51 NC_006146.1 + 66651 0.8 0.467427
Target:  5'- aCGAUAGCAUGGCCUCUGGGUAg--- -3'
miRNA:   3'- gGUUAUCGUACUGGAGGUCCAUggug -5'
28760 3' -51 NC_006146.1 + 136068 0.73 0.837973
Target:  5'- -gGGUGGCcgGGCCgcugCCGGGU-CCGCu -3'
miRNA:   3'- ggUUAUCGuaCUGGa---GGUCCAuGGUG- -5'
28760 3' -51 NC_006146.1 + 136254 0.73 0.837973
Target:  5'- -gGGUGGCcgGGCCgcugCCGGGU-CCGCu -3'
miRNA:   3'- ggUUAUCGuaCUGGa---GGUCCAuGGUG- -5'
28760 3' -51 NC_006146.1 + 33964 0.66 0.99553
Target:  5'- uCCGGgugGGCGUGGuCCgCUGGGU-CCGCu -3'
miRNA:   3'- -GGUUa--UCGUACU-GGaGGUCCAuGGUG- -5'
28760 3' -51 NC_006146.1 + 157207 0.75 0.754895
Target:  5'- gCAAUAuaAUGGCCUCCAGGc-CCGCc -3'
miRNA:   3'- gGUUAUcgUACUGGAGGUCCauGGUG- -5'
28760 3' -51 NC_006146.1 + 99438 0.74 0.811752
Target:  5'- uCCAggAGCAUGAggcCCUcgcuccucggcgCCAGGUGCCAa -3'
miRNA:   3'- -GGUuaUCGUACU---GGA------------GGUCCAUGGUg -5'
28760 3' -51 NC_006146.1 + 135139 0.73 0.837973
Target:  5'- -gGGUGGCcgGGCCgcugCCGGGU-CCGCu -3'
miRNA:   3'- ggUUAUCGuaCUGGa---GGUCCAuGGUG- -5'
28760 3' -51 NC_006146.1 + 135232 0.73 0.837973
Target:  5'- -gGGUGGCcgGGCCgcugCCGGGU-CCGCu -3'
miRNA:   3'- ggUUAUCGuaCUGGa---GGUCCAuGGUG- -5'
28760 3' -51 NC_006146.1 + 135511 0.73 0.837973
Target:  5'- -gGGUGGCcgGGCCgcugCCGGGU-CCGCu -3'
miRNA:   3'- ggUUAUCGuaCUGGa---GGUCCAuGGUG- -5'
28760 3' -51 NC_006146.1 + 135975 0.73 0.837973
Target:  5'- -gGGUGGCcgGGCCgcugCCGGGU-CCGCu -3'
miRNA:   3'- ggUUAUCGuaCUGGa---GGUCCAuGGUG- -5'
28760 3' -51 NC_006146.1 + 135697 0.73 0.837973
Target:  5'- -gGGUGGCcgGGCCgcugCCGGGU-CCGCu -3'
miRNA:   3'- ggUUAUCGuaCUGGa---GGUCCAuGGUG- -5'
28760 3' -51 NC_006146.1 + 135418 0.73 0.837973
Target:  5'- -gGGUGGCcgGGCCgcugCCGGGU-CCGCu -3'
miRNA:   3'- ggUUAUCGuaCUGGa---GGUCCAuGGUG- -5'
28760 3' -51 NC_006146.1 + 99193 0.8 0.477097
Target:  5'- aCCAgGUGGCGUccGCCUCCAGGgagGCCGCg -3'
miRNA:   3'- -GGU-UAUCGUAc-UGGAGGUCCa--UGGUG- -5'
28760 3' -51 NC_006146.1 + 135789 0.73 0.837973
Target:  5'- -gGGUGGCcgGGCCgcugCCGGGU-CCGCu -3'
miRNA:   3'- ggUUAUCGuaCUGGa---GGUCCAuGGUG- -5'
28760 3' -51 NC_006146.1 + 48477 0.8 0.486865
Target:  5'- uCCGAUAGCAUGGCggCCAGGauCCGCg -3'
miRNA:   3'- -GGUUAUCGUACUGgaGGUCCauGGUG- -5'
28760 3' -51 NC_006146.1 + 135325 0.73 0.837973
Target:  5'- -gGGUGGCcgGGCCgcugCCGGGU-CCGCu -3'
miRNA:   3'- ggUUAUCGuaCUGGa---GGUCCAuGGUG- -5'
28760 3' -51 NC_006146.1 + 135882 0.73 0.837973
Target:  5'- -gGGUGGCcgGGCCgcugCCGGGU-CCGCu -3'
miRNA:   3'- ggUUAUCGuaCUGGa---GGUCCAuGGUG- -5'
28760 3' -51 NC_006146.1 + 136161 0.73 0.837973
Target:  5'- -gGGUGGCcgGGCCgcugCCGGGU-CCGCu -3'
miRNA:   3'- ggUUAUCGuaCUGGa---GGUCCAuGGUG- -5'
28760 3' -51 NC_006146.1 + 155952 0.76 0.673027
Target:  5'- aCCGAUAGCAUGGCUgCCAGaGUuCCAg -3'
miRNA:   3'- -GGUUAUCGUACUGGaGGUC-CAuGGUg -5'
28760 3' -51 NC_006146.1 + 1834 0.73 0.829421
Target:  5'- --cAUGGCggGGCacagCCGGGUGCCACa -3'
miRNA:   3'- gguUAUCGuaCUGga--GGUCCAUGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.