miRNA display CGI


Results 1 - 20 of 140 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28760 3' -51 NC_006146.1 + 67598 0.7 0.952607
Target:  5'- gCCcGUGGCGuuUGGCCUCC-GGUGCgAg -3'
miRNA:   3'- -GGuUAUCGU--ACUGGAGGuCCAUGgUg -5'
28760 3' -51 NC_006146.1 + 80950 0.68 0.982781
Target:  5'- aCCAccGGCAcUGcuuCCUCCA-GUGCCACc -3'
miRNA:   3'- -GGUuaUCGU-ACu--GGAGGUcCAUGGUG- -5'
28760 3' -51 NC_006146.1 + 25458 0.68 0.980686
Target:  5'- gUCAAggugGGCAUGACaCUCCuGG-ACgACg -3'
miRNA:   3'- -GGUUa---UCGUACUG-GAGGuCCaUGgUG- -5'
28760 3' -51 NC_006146.1 + 39169 0.68 0.973261
Target:  5'- -gAAUuGCAguuUGGCCUCCGGGguCCACu -3'
miRNA:   3'- ggUUAuCGU---ACUGGAGGUCCauGGUG- -5'
28760 3' -51 NC_006146.1 + 165797 0.68 0.972702
Target:  5'- aCGGUGGCAcGGCCggCUAGGggggcgucccugGCCGCg -3'
miRNA:   3'- gGUUAUCGUaCUGGa-GGUCCa-----------UGGUG- -5'
28760 3' -51 NC_006146.1 + 20676 0.69 0.970379
Target:  5'- gCCAGUcuGC-UGACCUCCuGGcugGCCAa -3'
miRNA:   3'- -GGUUAu-CGuACUGGAGGuCCa--UGGUg -5'
28760 3' -51 NC_006146.1 + 60586 0.69 0.967282
Target:  5'- aCCugagAGCAUGGCCUCCGuguuugccugcuGGgGCUGCg -3'
miRNA:   3'- -GGuua-UCGUACUGGAGGU------------CCaUGGUG- -5'
28760 3' -51 NC_006146.1 + 160727 0.69 0.956629
Target:  5'- gCCuGUGGCAUuacuuCCUCCAGGUAaaACu -3'
miRNA:   3'- -GGuUAUCGUAcu---GGAGGUCCAUggUG- -5'
28760 3' -51 NC_006146.1 + 107959 0.7 0.952607
Target:  5'- ----cAGCcgaGACCUCCAGGgcccuggagACCACa -3'
miRNA:   3'- gguuaUCGua-CUGGAGGUCCa--------UGGUG- -5'
28760 3' -51 NC_006146.1 + 50178 0.68 0.982781
Target:  5'- aCGAUgGGgGUGAUCUCCcggaucAGGUGCUGCu -3'
miRNA:   3'- gGUUA-UCgUACUGGAGG------UCCAUGGUG- -5'
28760 3' -51 NC_006146.1 + 129055 0.67 0.986451
Target:  5'- cCCGGUAGCcccUGGCCacggcCCGGGUGuuuUCACa -3'
miRNA:   3'- -GGUUAUCGu--ACUGGa----GGUCCAU---GGUG- -5'
28760 3' -51 NC_006146.1 + 56655 0.67 0.989489
Target:  5'- aCUAcgAGC-UGGcCCUCCcugAGGUGCCGg -3'
miRNA:   3'- -GGUuaUCGuACU-GGAGG---UCCAUGGUg -5'
28760 3' -51 NC_006146.1 + 103727 0.66 0.994791
Target:  5'- cCCAAggAGCAguuCCUCCcGGacGCCGCg -3'
miRNA:   3'- -GGUUa-UCGUacuGGAGGuCCa-UGGUG- -5'
28760 3' -51 NC_006146.1 + 17200 0.66 0.994791
Target:  5'- aCCAu--GCAcGAgaaguacgaggcCCUCCAGG-ACCGCu -3'
miRNA:   3'- -GGUuauCGUaCU------------GGAGGUCCaUGGUG- -5'
28760 3' -51 NC_006146.1 + 16958 0.66 0.994791
Target:  5'- cCCAAcgggAGCGgcgGGCCUUCcuggacaaGGGUACCuACa -3'
miRNA:   3'- -GGUUa---UCGUa--CUGGAGG--------UCCAUGG-UG- -5'
28760 3' -51 NC_006146.1 + 23586 0.66 0.993957
Target:  5'- cCCAGcuGCGU--CUUCCAGGUGCaCGCu -3'
miRNA:   3'- -GGUUauCGUAcuGGAGGUCCAUG-GUG- -5'
28760 3' -51 NC_006146.1 + 122967 0.66 0.993957
Target:  5'- aCCAAgagggAGCggGAcgaucuCCUCCAGG--CCACg -3'
miRNA:   3'- -GGUUa----UCGuaCU------GGAGGUCCauGGUG- -5'
28760 3' -51 NC_006146.1 + 117052 0.66 0.993957
Target:  5'- ----cAGCGUcgccuaccGCCUCCGGG-ACCACa -3'
miRNA:   3'- gguuaUCGUAc-------UGGAGGUCCaUGGUG- -5'
28760 3' -51 NC_006146.1 + 113041 0.66 0.993957
Target:  5'- gCCA--GGaCGUcGGCCUCgGGGU-CCACg -3'
miRNA:   3'- -GGUuaUC-GUA-CUGGAGgUCCAuGGUG- -5'
28760 3' -51 NC_006146.1 + 130944 0.67 0.990793
Target:  5'- uUAAUAGCAggGACC-CgGGGUGCUg- -3'
miRNA:   3'- gGUUAUCGUa-CUGGaGgUCCAUGGug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.