miRNA display CGI


Results 1 - 20 of 140 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28760 3' -51 NC_006146.1 + 109893 0.66 0.994791
Target:  5'- gCGAUcGGcCGUGGCCUCCAGaaACUGCc -3'
miRNA:   3'- gGUUA-UC-GUACUGGAGGUCcaUGGUG- -5'
28760 3' -51 NC_006146.1 + 33964 0.66 0.99553
Target:  5'- uCCGGgugGGCGUGGuCCgCUGGGU-CCGCu -3'
miRNA:   3'- -GGUUa--UCGUACU-GGaGGUCCAuGGUG- -5'
28760 3' -51 NC_006146.1 + 33188 0.66 0.994791
Target:  5'- gCCGcucGGUccugGGCCUCCGGGUGCUc- -3'
miRNA:   3'- -GGUua-UCGua--CUGGAGGUCCAUGGug -5'
28760 3' -51 NC_006146.1 + 95943 0.66 0.991855
Target:  5'- aCCGu--GCGUGACCUgcugaCCaccaacaucuaccGGGUGCUACa -3'
miRNA:   3'- -GGUuauCGUACUGGA-----GG-------------UCCAUGGUG- -5'
28760 3' -51 NC_006146.1 + 39145 0.66 0.992077
Target:  5'- aCGAUAGCAUGGuggccggguccuccCagcagguccgugucuCUCCAGGUGCC-Ca -3'
miRNA:   3'- gGUUAUCGUACU--------------G---------------GAGGUCCAUGGuG- -5'
28760 3' -51 NC_006146.1 + 109264 0.66 0.993957
Target:  5'- uCCAAUAGaAUGugCUUCAGGUcguaGCUg- -3'
miRNA:   3'- -GGUUAUCgUACugGAGGUCCA----UGGug -5'
28760 3' -51 NC_006146.1 + 117479 0.66 0.992918
Target:  5'- aCCAccAGCAgauucauaugauuUGGCCUCCuGGagGCCAg -3'
miRNA:   3'- -GGUuaUCGU-------------ACUGGAGGuCCa-UGGUg -5'
28760 3' -51 NC_006146.1 + 149773 0.66 0.992077
Target:  5'- aUCA--GGCAggagaaggucuucucGGCCUCCAGGgagauggggGCCACa -3'
miRNA:   3'- -GGUuaUCGUa--------------CUGGAGGUCCa--------UGGUG- -5'
28760 3' -51 NC_006146.1 + 147463 0.66 0.994791
Target:  5'- gCCGAgacgGGCAgccgGAgCUUguGGUACUGCc -3'
miRNA:   3'- -GGUUa---UCGUa---CUgGAGguCCAUGGUG- -5'
28760 3' -51 NC_006146.1 + 49565 0.66 0.993018
Target:  5'- gCCAGgcccAGCAUGGCCucgauguccUCCAGG-AUgACg -3'
miRNA:   3'- -GGUUa---UCGUACUGG---------AGGUCCaUGgUG- -5'
28760 3' -51 NC_006146.1 + 138908 0.66 0.993018
Target:  5'- uCCuccUAGCGUGucgccuGCCUCCGGGaugcAUCACu -3'
miRNA:   3'- -GGuu-AUCGUAC------UGGAGGUCCa---UGGUG- -5'
28760 3' -51 NC_006146.1 + 69593 0.66 0.991967
Target:  5'- gCCAGguccuggGGCAgcgaGACgUCCAGGc-CCACg -3'
miRNA:   3'- -GGUUa------UCGUa---CUGgAGGUCCauGGUG- -5'
28760 3' -51 NC_006146.1 + 103727 0.66 0.994791
Target:  5'- cCCAAggAGCAguuCCUCCcGGacGCCGCg -3'
miRNA:   3'- -GGUUa-UCGUacuGGAGGuCCa-UGGUG- -5'
28760 3' -51 NC_006146.1 + 17200 0.66 0.994791
Target:  5'- aCCAu--GCAcGAgaaguacgaggcCCUCCAGG-ACCGCu -3'
miRNA:   3'- -GGUuauCGUaCU------------GGAGGUCCaUGGUG- -5'
28760 3' -51 NC_006146.1 + 16958 0.66 0.994791
Target:  5'- cCCAAcgggAGCGgcgGGCCUUCcuggacaaGGGUACCuACa -3'
miRNA:   3'- -GGUUa---UCGUa--CUGGAGG--------UCCAUGG-UG- -5'
28760 3' -51 NC_006146.1 + 23586 0.66 0.993957
Target:  5'- cCCAGcuGCGU--CUUCCAGGUGCaCGCu -3'
miRNA:   3'- -GGUUauCGUAcuGGAGGUCCAUG-GUG- -5'
28760 3' -51 NC_006146.1 + 122967 0.66 0.993957
Target:  5'- aCCAAgagggAGCggGAcgaucuCCUCCAGG--CCACg -3'
miRNA:   3'- -GGUUa----UCGuaCU------GGAGGUCCauGGUG- -5'
28760 3' -51 NC_006146.1 + 117052 0.66 0.993957
Target:  5'- ----cAGCGUcgccuaccGCCUCCGGG-ACCACa -3'
miRNA:   3'- gguuaUCGUAc-------UGGAGGUCCaUGGUG- -5'
28760 3' -51 NC_006146.1 + 113041 0.66 0.993957
Target:  5'- gCCA--GGaCGUcGGCCUCgGGGU-CCACg -3'
miRNA:   3'- -GGUuaUC-GUA-CUGGAGgUCCAuGGUG- -5'
28760 3' -51 NC_006146.1 + 154885 0.66 0.993957
Target:  5'- cCCGucggggGGCAgGGCCUcgcCCGGGcugACCGCg -3'
miRNA:   3'- -GGUua----UCGUaCUGGA---GGUCCa--UGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.