miRNA display CGI


Results 1 - 20 of 140 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28760 3' -51 NC_006146.1 + 1834 0.73 0.829421
Target:  5'- --cAUGGCggGGCacagCCGGGUGCCACa -3'
miRNA:   3'- gguUAUCGuaCUGga--GGUCCAUGGUG- -5'
28760 3' -51 NC_006146.1 + 4518 0.67 0.986451
Target:  5'- gCCAGcggGGgGUGACCaUCUcGGUGCCGg -3'
miRNA:   3'- -GGUUa--UCgUACUGG-AGGuCCAUGGUg -5'
28760 3' -51 NC_006146.1 + 6432 0.67 0.988044
Target:  5'- -aAAUGGUAgaGACC-CUAGGUugCGCg -3'
miRNA:   3'- ggUUAUCGUa-CUGGaGGUCCAugGUG- -5'
28760 3' -51 NC_006146.1 + 15270 0.7 0.939066
Target:  5'- aCCAGUaagGGUAgguaacuucACCUCCAGGgcCCACa -3'
miRNA:   3'- -GGUUA---UCGUac-------UGGAGGUCCauGGUG- -5'
28760 3' -51 NC_006146.1 + 16958 0.66 0.994791
Target:  5'- cCCAAcgggAGCGgcgGGCCUUCcuggacaaGGGUACCuACa -3'
miRNA:   3'- -GGUUa---UCGUa--CUGGAGG--------UCCAUGG-UG- -5'
28760 3' -51 NC_006146.1 + 17200 0.66 0.994791
Target:  5'- aCCAu--GCAcGAgaaguacgaggcCCUCCAGG-ACCGCu -3'
miRNA:   3'- -GGUuauCGUaCU------------GGAGGUCCaUGGUG- -5'
28760 3' -51 NC_006146.1 + 18348 0.7 0.939066
Target:  5'- aCCAGUaagGGUAgguaacuucACCUCCAGGgcCCACa -3'
miRNA:   3'- -GGUUA---UCGUac-------UGGAGGUCCauGGUG- -5'
28760 3' -51 NC_006146.1 + 20676 0.69 0.970379
Target:  5'- gCCAGUcuGC-UGACCUCCuGGcugGCCAa -3'
miRNA:   3'- -GGUUAu-CGuACUGGAGGuCCa--UGGUg -5'
28760 3' -51 NC_006146.1 + 21426 0.7 0.939066
Target:  5'- aCCAGUaagGGUAgguaacuucACCUCCAGGgcCCACa -3'
miRNA:   3'- -GGUUA---UCGUac-------UGGAGGUCCauGGUG- -5'
28760 3' -51 NC_006146.1 + 23586 0.66 0.993957
Target:  5'- cCCAGcuGCGU--CUUCCAGGUGCaCGCu -3'
miRNA:   3'- -GGUUauCGUAcuGGAGGUCCAUG-GUG- -5'
28760 3' -51 NC_006146.1 + 24504 0.7 0.939066
Target:  5'- aCCAGUaagGGUAgguaacuucACCUCCAGGgcCCACa -3'
miRNA:   3'- -GGUUA---UCGUac-------UGGAGGUCCauGGUG- -5'
28760 3' -51 NC_006146.1 + 25458 0.68 0.980686
Target:  5'- gUCAAggugGGCAUGACaCUCCuGG-ACgACg -3'
miRNA:   3'- -GGUUa---UCGUACUG-GAGGuCCaUGgUG- -5'
28760 3' -51 NC_006146.1 + 27582 0.7 0.939066
Target:  5'- aCCAGUaagGGUAgguaacuucACCUCCAGGgcCCACa -3'
miRNA:   3'- -GGUUA---UCGUac-------UGGAGGUCCauGGUG- -5'
28760 3' -51 NC_006146.1 + 32615 0.99 0.038293
Target:  5'- cCCAAUAGCAUcACCUCCAGGUACCACc -3'
miRNA:   3'- -GGUUAUCGUAcUGGAGGUCCAUGGUG- -5'
28760 3' -51 NC_006146.1 + 33188 0.66 0.994791
Target:  5'- gCCGcucGGUccugGGCCUCCGGGUGCUc- -3'
miRNA:   3'- -GGUua-UCGua--CUGGAGGUCCAUGGug -5'
28760 3' -51 NC_006146.1 + 33964 0.66 0.99553
Target:  5'- uCCGGgugGGCGUGGuCCgCUGGGU-CCGCu -3'
miRNA:   3'- -GGUUa--UCGUACU-GGaGGUCCAuGGUG- -5'
28760 3' -51 NC_006146.1 + 39145 0.66 0.992077
Target:  5'- aCGAUAGCAUGGuggccggguccuccCagcagguccgugucuCUCCAGGUGCC-Ca -3'
miRNA:   3'- gGUUAUCGUACU--------------G---------------GAGGUCCAUGGuG- -5'
28760 3' -51 NC_006146.1 + 39169 0.68 0.973261
Target:  5'- -gAAUuGCAguuUGGCCUCCGGGguCCACu -3'
miRNA:   3'- ggUUAuCGU---ACUGGAGGUCCauGGUG- -5'
28760 3' -51 NC_006146.1 + 46467 0.73 0.846327
Target:  5'- aCCAucccAUGGCAUGACCUgauggcaaAGGUGCCGg -3'
miRNA:   3'- -GGU----UAUCGUACUGGAgg------UCCAUGGUg -5'
28760 3' -51 NC_006146.1 + 47762 0.67 0.9847
Target:  5'- cCCuggcgAGUAcGGCCUCCAGG-GCCGu -3'
miRNA:   3'- -GGuua--UCGUaCUGGAGGUCCaUGGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.