miRNA display CGI


Results 1 - 20 of 140 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28760 3' -51 NC_006146.1 + 170760 0.72 0.891877
Target:  5'- aCCAcgGGCA--GCCaUCCAGGcGCCAUa -3'
miRNA:   3'- -GGUuaUCGUacUGG-AGGUCCaUGGUG- -5'
28760 3' -51 NC_006146.1 + 165797 0.68 0.972702
Target:  5'- aCGGUGGCAcGGCCggCUAGGggggcgucccugGCCGCg -3'
miRNA:   3'- gGUUAUCGUaCUGGa-GGUCCa-----------UGGUG- -5'
28760 3' -51 NC_006146.1 + 164526 0.68 0.980686
Target:  5'- aCCGGUAcCAaacgGACC-CCAGG-GCCACg -3'
miRNA:   3'- -GGUUAUcGUa---CUGGaGGUCCaUGGUG- -5'
28760 3' -51 NC_006146.1 + 160727 0.69 0.956629
Target:  5'- gCCuGUGGCAUuacuuCCUCCAGGUAaaACu -3'
miRNA:   3'- -GGuUAUCGUAcu---GGAGGUCCAUggUG- -5'
28760 3' -51 NC_006146.1 + 157207 0.75 0.754895
Target:  5'- gCAAUAuaAUGGCCUCCAGGc-CCGCc -3'
miRNA:   3'- gGUUAUcgUACUGGAGGUCCauGGUG- -5'
28760 3' -51 NC_006146.1 + 155952 0.76 0.673027
Target:  5'- aCCGAUAGCAUGGCUgCCAGaGUuCCAg -3'
miRNA:   3'- -GGUUAUCGUACUGGaGGUC-CAuGGUg -5'
28760 3' -51 NC_006146.1 + 154885 0.66 0.993957
Target:  5'- cCCGucggggGGCAgGGCCUcgcCCGGGcugACCGCg -3'
miRNA:   3'- -GGUua----UCGUaCUGGA---GGUCCa--UGGUG- -5'
28760 3' -51 NC_006146.1 + 149773 0.66 0.992077
Target:  5'- aUCA--GGCAggagaaggucuucucGGCCUCCAGGgagauggggGCCACa -3'
miRNA:   3'- -GGUuaUCGUa--------------CUGGAGGUCCa--------UGGUG- -5'
28760 3' -51 NC_006146.1 + 147463 0.66 0.994791
Target:  5'- gCCGAgacgGGCAgccgGAgCUUguGGUACUGCc -3'
miRNA:   3'- -GGUUa---UCGUa---CUgGAGguCCAUGGUG- -5'
28760 3' -51 NC_006146.1 + 146196 0.67 0.9847
Target:  5'- gCUAGUGcuGCAUGGgcuCCUCCGGGguaagcggcgGCCAUg -3'
miRNA:   3'- -GGUUAU--CGUACU---GGAGGUCCa---------UGGUG- -5'
28760 3' -51 NC_006146.1 + 143075 0.67 0.986451
Target:  5'- uCCAAUAGCAUGAaaggCGGGUaGCCGa -3'
miRNA:   3'- -GGUUAUCGUACUggagGUCCA-UGGUg -5'
28760 3' -51 NC_006146.1 + 140841 0.68 0.978407
Target:  5'- uCUGAUAGCAUGACagCUAGGUcACC-Ca -3'
miRNA:   3'- -GGUUAUCGUACUGgaGGUCCA-UGGuG- -5'
28760 3' -51 NC_006146.1 + 138908 0.66 0.993018
Target:  5'- uCCuccUAGCGUGucgccuGCCUCCGGGaugcAUCACu -3'
miRNA:   3'- -GGuu-AUCGUAC------UGGAGGUCCa---UGGUG- -5'
28760 3' -51 NC_006146.1 + 137584 0.67 0.989489
Target:  5'- cCCGGUccuggAGCucgGGCCgggggCCGGGUGCCc- -3'
miRNA:   3'- -GGUUA-----UCGua-CUGGa----GGUCCAUGGug -5'
28760 3' -51 NC_006146.1 + 137555 0.73 0.837973
Target:  5'- -gGGUGGCcgGGCCgcugCCGGGU-CCGCu -3'
miRNA:   3'- ggUUAUCGuaCUGGa---GGUCCAuGGUG- -5'
28760 3' -51 NC_006146.1 + 137491 0.66 0.994791
Target:  5'- cCCGGUccuggAGCucggGGCCgggggCCGGGUGCCc- -3'
miRNA:   3'- -GGUUA-----UCGua--CUGGa----GGUCCAUGGug -5'
28760 3' -51 NC_006146.1 + 137462 0.73 0.837973
Target:  5'- -gGGUGGCcgGGCCgcugCCGGGU-CCGCu -3'
miRNA:   3'- ggUUAUCGuaCUGGa---GGUCCAuGGUG- -5'
28760 3' -51 NC_006146.1 + 137398 0.66 0.994791
Target:  5'- cCCGGUccuggAGCucggGGCCgggggCCGGGUGCCc- -3'
miRNA:   3'- -GGUUA-----UCGua--CUGGa----GGUCCAUGGug -5'
28760 3' -51 NC_006146.1 + 137369 0.73 0.837973
Target:  5'- -gGGUGGCcgGGCCgcugCCGGGU-CCGCu -3'
miRNA:   3'- ggUUAUCGuaCUGGa---GGUCCAuGGUG- -5'
28760 3' -51 NC_006146.1 + 137305 0.66 0.994791
Target:  5'- cCCGGUccuggAGCucggGGCCgggggCCGGGUGCCc- -3'
miRNA:   3'- -GGUUA-----UCGua--CUGGa----GGUCCAUGGug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.