miRNA display CGI


Results 21 - 40 of 140 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28760 3' -51 NC_006146.1 + 48477 0.8 0.486865
Target:  5'- uCCGAUAGCAUGGCggCCAGGauCCGCg -3'
miRNA:   3'- -GGUUAUCGUACUGgaGGUCCauGGUG- -5'
28760 3' -51 NC_006146.1 + 48864 0.67 0.9847
Target:  5'- gCGA-AGCcgucGGCCUCCAGGcGCCAg -3'
miRNA:   3'- gGUUaUCGua--CUGGAGGUCCaUGGUg -5'
28760 3' -51 NC_006146.1 + 49565 0.66 0.993018
Target:  5'- gCCAGgcccAGCAUGGCCucgauguccUCCAGG-AUgACg -3'
miRNA:   3'- -GGUUa---UCGUACUGG---------AGGUCCaUGgUG- -5'
28760 3' -51 NC_006146.1 + 50178 0.68 0.982781
Target:  5'- aCGAUgGGgGUGAUCUCCcggaucAGGUGCUGCu -3'
miRNA:   3'- gGUUA-UCgUACUGGAGG------UCCAUGGUG- -5'
28760 3' -51 NC_006146.1 + 51062 0.7 0.948341
Target:  5'- uCCuGUAGaAUGAUCUCCAGGUccucugGCCGg -3'
miRNA:   3'- -GGuUAUCgUACUGGAGGUCCA------UGGUg -5'
28760 3' -51 NC_006146.1 + 53380 0.7 0.951353
Target:  5'- cCCGAgggagaGGCGugagaccuauucccUGGCCUCCAGGagGCCAa -3'
miRNA:   3'- -GGUUa-----UCGU--------------ACUGGAGGUCCa-UGGUg -5'
28760 3' -51 NC_006146.1 + 53888 0.67 0.989489
Target:  5'- cCCGuagGGCGUaGCCcaggUCCAGGgcCCGCu -3'
miRNA:   3'- -GGUua-UCGUAcUGG----AGGUCCauGGUG- -5'
28760 3' -51 NC_006146.1 + 55168 0.67 0.986451
Target:  5'- gCAggGGgGUGACCgcgucCCAGGcugcgGCCGCg -3'
miRNA:   3'- gGUuaUCgUACUGGa----GGUCCa----UGGUG- -5'
28760 3' -51 NC_006146.1 + 55521 0.68 0.980686
Target:  5'- aCGcgAGCGgccagGGCCUCCAGcuccGCCGCc -3'
miRNA:   3'- gGUuaUCGUa----CUGGAGGUCca--UGGUG- -5'
28760 3' -51 NC_006146.1 + 56655 0.67 0.989489
Target:  5'- aCUAcgAGC-UGGcCCUCCcugAGGUGCCGg -3'
miRNA:   3'- -GGUuaUCGuACU-GGAGG---UCCAUGGUg -5'
28760 3' -51 NC_006146.1 + 58901 0.7 0.943828
Target:  5'- cCCAcuuuUGGCGcGACCUgCAGGgcgagGCCAUg -3'
miRNA:   3'- -GGUu---AUCGUaCUGGAgGUCCa----UGGUG- -5'
28760 3' -51 NC_006146.1 + 60586 0.69 0.967282
Target:  5'- aCCugagAGCAUGGCCUCCGuguuugccugcuGGgGCUGCg -3'
miRNA:   3'- -GGuua-UCGUACUGGAGGU------------CCaUGGUG- -5'
28760 3' -51 NC_006146.1 + 63253 0.68 0.97489
Target:  5'- ----gGGCAaUGGCCUCCGGGgggcucuaccuggGCCAUu -3'
miRNA:   3'- gguuaUCGU-ACUGGAGGUCCa------------UGGUG- -5'
28760 3' -51 NC_006146.1 + 66651 0.8 0.467427
Target:  5'- aCGAUAGCAUGGCCUCUGGGUAg--- -3'
miRNA:   3'- gGUUAUCGUACUGGAGGUCCAUggug -5'
28760 3' -51 NC_006146.1 + 67216 0.67 0.988044
Target:  5'- gCCGGUcGCcUGGCCggCCAGGcacaggaaGCCACg -3'
miRNA:   3'- -GGUUAuCGuACUGGa-GGUCCa-------UGGUG- -5'
28760 3' -51 NC_006146.1 + 67598 0.7 0.952607
Target:  5'- gCCcGUGGCGuuUGGCCUCC-GGUGCgAg -3'
miRNA:   3'- -GGuUAUCGU--ACUGGAGGuCCAUGgUg -5'
28760 3' -51 NC_006146.1 + 69593 0.66 0.991967
Target:  5'- gCCAGguccuggGGCAgcgaGACgUCCAGGc-CCACg -3'
miRNA:   3'- -GGUUa------UCGUa---CUGgAGGUCCauGGUG- -5'
28760 3' -51 NC_006146.1 + 71327 0.66 0.993957
Target:  5'- uUCGGUGGUAacauUGGCCUUUccaccugcugGGGUGCCAg -3'
miRNA:   3'- -GGUUAUCGU----ACUGGAGG----------UCCAUGGUg -5'
28760 3' -51 NC_006146.1 + 74747 0.7 0.939066
Target:  5'- cCCAGUgAGCca-GCCUCCGGGggGCCAa -3'
miRNA:   3'- -GGUUA-UCGuacUGGAGGUCCa-UGGUg -5'
28760 3' -51 NC_006146.1 + 77916 0.74 0.802653
Target:  5'- gCAggGGCGggcGGCCUCgCAGGUGCCGg -3'
miRNA:   3'- gGUuaUCGUa--CUGGAG-GUCCAUGGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.