miRNA display CGI


Results 21 - 40 of 140 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28760 3' -51 NC_006146.1 + 136161 0.73 0.837973
Target:  5'- -gGGUGGCcgGGCCgcugCCGGGU-CCGCu -3'
miRNA:   3'- ggUUAUCGuaCUGGa---GGUCCAuGGUG- -5'
28760 3' -51 NC_006146.1 + 136068 0.73 0.837973
Target:  5'- -gGGUGGCcgGGCCgcugCCGGGU-CCGCu -3'
miRNA:   3'- ggUUAUCGuaCUGGa---GGUCCAuGGUG- -5'
28760 3' -51 NC_006146.1 + 135975 0.73 0.837973
Target:  5'- -gGGUGGCcgGGCCgcugCCGGGU-CCGCu -3'
miRNA:   3'- ggUUAUCGuaCUGGa---GGUCCAuGGUG- -5'
28760 3' -51 NC_006146.1 + 135604 0.73 0.837973
Target:  5'- -gGGUGGCcgGGCCgcugCCGGGU-CCGCu -3'
miRNA:   3'- ggUUAUCGuaCUGGa---GGUCCAuGGUG- -5'
28760 3' -51 NC_006146.1 + 135882 0.73 0.837973
Target:  5'- -gGGUGGCcgGGCCgcugCCGGGU-CCGCu -3'
miRNA:   3'- ggUUAUCGuaCUGGa---GGUCCAuGGUG- -5'
28760 3' -51 NC_006146.1 + 135697 0.73 0.837973
Target:  5'- -gGGUGGCcgGGCCgcugCCGGGU-CCGCu -3'
miRNA:   3'- ggUUAUCGuaCUGGa---GGUCCAuGGUG- -5'
28760 3' -51 NC_006146.1 + 135418 0.73 0.837973
Target:  5'- -gGGUGGCcgGGCCgcugCCGGGU-CCGCu -3'
miRNA:   3'- ggUUAUCGuaCUGGa---GGUCCAuGGUG- -5'
28760 3' -51 NC_006146.1 + 135511 0.73 0.837973
Target:  5'- -gGGUGGCcgGGCCgcugCCGGGU-CCGCu -3'
miRNA:   3'- ggUUAUCGuaCUGGa---GGUCCAuGGUG- -5'
28760 3' -51 NC_006146.1 + 135325 0.73 0.837973
Target:  5'- -gGGUGGCcgGGCCgcugCCGGGU-CCGCu -3'
miRNA:   3'- ggUUAUCGuaCUGGa---GGUCCAuGGUG- -5'
28760 3' -51 NC_006146.1 + 136254 0.73 0.837973
Target:  5'- -gGGUGGCcgGGCCgcugCCGGGU-CCGCu -3'
miRNA:   3'- ggUUAUCGuaCUGGa---GGUCCAuGGUG- -5'
28760 3' -51 NC_006146.1 + 136347 0.73 0.837973
Target:  5'- -gGGUGGCcgGGCCgcugCCGGGU-CCGCu -3'
miRNA:   3'- ggUUAUCGuaCUGGa---GGUCCAuGGUG- -5'
28760 3' -51 NC_006146.1 + 136904 0.73 0.837973
Target:  5'- -gGGUGGCcgGGCCgcugCCGGGU-CCGCu -3'
miRNA:   3'- ggUUAUCGuaCUGGa---GGUCCAuGGUG- -5'
28760 3' -51 NC_006146.1 + 136811 0.73 0.837973
Target:  5'- -gGGUGGCcgGGCCgcugCCGGGU-CCGCu -3'
miRNA:   3'- ggUUAUCGuaCUGGa---GGUCCAuGGUG- -5'
28760 3' -51 NC_006146.1 + 136626 0.73 0.837973
Target:  5'- -gGGUGGCcgGGCCgcugCCGGGU-CCGCu -3'
miRNA:   3'- ggUUAUCGuaCUGGa---GGUCCAuGGUG- -5'
28760 3' -51 NC_006146.1 + 136533 0.73 0.837973
Target:  5'- -gGGUGGCcgGGCCgcugCCGGGU-CCGCu -3'
miRNA:   3'- ggUUAUCGuaCUGGa---GGUCCAuGGUG- -5'
28760 3' -51 NC_006146.1 + 136440 0.73 0.837973
Target:  5'- -gGGUGGCcgGGCCgcugCCGGGU-CCGCu -3'
miRNA:   3'- ggUUAUCGuaCUGGa---GGUCCAuGGUG- -5'
28760 3' -51 NC_006146.1 + 135232 0.73 0.837973
Target:  5'- -gGGUGGCcgGGCCgcugCCGGGU-CCGCu -3'
miRNA:   3'- ggUUAUCGuaCUGGa---GGUCCAuGGUG- -5'
28760 3' -51 NC_006146.1 + 46467 0.73 0.846327
Target:  5'- aCCAucccAUGGCAUGACCUgauggcaaAGGUGCCGg -3'
miRNA:   3'- -GGU----UAUCGUACUGGAgg------UCCAUGGUg -5'
28760 3' -51 NC_006146.1 + 81766 0.72 0.862408
Target:  5'- gCAugagAGCAUGGCCgcccggucUCCggGGGUGCCACc -3'
miRNA:   3'- gGUua--UCGUACUGG--------AGG--UCCAUGGUG- -5'
28760 3' -51 NC_006146.1 + 84573 0.72 0.884861
Target:  5'- aCCAAUGGC-UGGCCuucaucagcuUCCGGGcaggcacaUGCCGCu -3'
miRNA:   3'- -GGUUAUCGuACUGG----------AGGUCC--------AUGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.