miRNA display CGI


Results 41 - 60 of 144 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28760 5' -52.7 NC_006146.1 + 85958 0.66 0.978104
Target:  5'- cUGACGCACCauacCAGGUGccguUCCAACaGGc -3'
miRNA:   3'- -ACUGUGUGGac--GUCCAUu---GGGUUG-CC- -5'
28760 5' -52.7 NC_006146.1 + 75821 0.66 0.978104
Target:  5'- cGAgGC-CCUGCGGGacauGCaCCAGgGGa -3'
miRNA:   3'- aCUgUGuGGACGUCCau--UG-GGUUgCC- -5'
28760 5' -52.7 NC_006146.1 + 137635 0.66 0.978104
Target:  5'- gGGC-CACCccccacccggaGCGGGgcagcGGCCCGGCGGa -3'
miRNA:   3'- aCUGuGUGGa----------CGUCCa----UUGGGUUGCC- -5'
28760 5' -52.7 NC_006146.1 + 115445 0.66 0.977867
Target:  5'- cGGC-CAUCgaGCGGGUGGCCacgguacugcuguCGGCGGg -3'
miRNA:   3'- aCUGuGUGGa-CGUCCAUUGG-------------GUUGCC- -5'
28760 5' -52.7 NC_006146.1 + 111741 0.67 0.975653
Target:  5'- gUGGCACACUgGguGGcguCCCugagGCGGg -3'
miRNA:   3'- -ACUGUGUGGaCguCCauuGGGu---UGCC- -5'
28760 5' -52.7 NC_006146.1 + 151391 0.67 0.975397
Target:  5'- --cCGCugCUGCAGGcgggggaUGGCgCGGCGGc -3'
miRNA:   3'- acuGUGugGACGUCC-------AUUGgGUUGCC- -5'
28760 5' -52.7 NC_006146.1 + 61884 0.67 0.97409
Target:  5'- gGGCGCGCCcuCGGGUaccccuaaccuucucAaagACCCGGCGGg -3'
miRNA:   3'- aCUGUGUGGacGUCCA---------------U---UGGGUUGCC- -5'
28760 5' -52.7 NC_006146.1 + 155810 0.67 0.973008
Target:  5'- gGGC-CACCgagucaaaCAGGUGAgUCAGCGGa -3'
miRNA:   3'- aCUGuGUGGac------GUCCAUUgGGUUGCC- -5'
28760 5' -52.7 NC_006146.1 + 153306 0.67 0.973008
Target:  5'- aGGCACcagGCCcggGcCAGGUcGCCCAGCa- -3'
miRNA:   3'- aCUGUG---UGGa--C-GUCCAuUGGGUUGcc -5'
28760 5' -52.7 NC_006146.1 + 59029 0.67 0.973008
Target:  5'- gUGaACGCACCgcugGC-GGUGaggGCgCAGCGGg -3'
miRNA:   3'- -AC-UGUGUGGa---CGuCCAU---UGgGUUGCC- -5'
28760 5' -52.7 NC_006146.1 + 36953 0.67 0.972455
Target:  5'- gUGGCugGCagucacugcgucaCUGUAGGUGaacugcgGCCCAcCGGg -3'
miRNA:   3'- -ACUGugUG-------------GACGUCCAU-------UGGGUuGCC- -5'
28760 5' -52.7 NC_006146.1 + 92313 0.67 0.970161
Target:  5'- gGGCuGCugCUGgGGGgcgGGCCCGGCcuGGg -3'
miRNA:   3'- aCUG-UGugGACgUCCa--UUGGGUUG--CC- -5'
28760 5' -52.7 NC_006146.1 + 92283 0.67 0.970161
Target:  5'- gGGCuGCugCUGgGGGgcgGGCCCGGCcuGGg -3'
miRNA:   3'- aCUG-UGugGACgUCCa--UUGGGUUG--CC- -5'
28760 5' -52.7 NC_006146.1 + 92044 0.67 0.970161
Target:  5'- gGGCuGCugCUGgGGGgcgGGCCCGGCcuGGg -3'
miRNA:   3'- aCUG-UGugGACgUCCa--UUGGGUUG--CC- -5'
28760 5' -52.7 NC_006146.1 + 92193 0.67 0.970161
Target:  5'- gGGCuGCugCUGgGGGgcgGGCCCGGCcuGGg -3'
miRNA:   3'- aCUG-UGugGACgUCCa--UUGGGUUG--CC- -5'
28760 5' -52.7 NC_006146.1 + 92163 0.67 0.970161
Target:  5'- gGGCuGCugCUGgGGGgcgGGCCCGGCcuGGg -3'
miRNA:   3'- aCUG-UGugGACgUCCa--UUGGGUUG--CC- -5'
28760 5' -52.7 NC_006146.1 + 92133 0.67 0.970161
Target:  5'- gGGCuGCugCUGgGGGgcgGGCCCGGCcuGGg -3'
miRNA:   3'- aCUG-UGugGACgUCCa--UUGGGUUG--CC- -5'
28760 5' -52.7 NC_006146.1 + 92100 0.67 0.970161
Target:  5'- cUGGgGCugCUGCuGGggggcgGGCCCGGCcuGGg -3'
miRNA:   3'- -ACUgUGugGACGuCCa-----UUGGGUUG--CC- -5'
28760 5' -52.7 NC_006146.1 + 41239 0.67 0.970161
Target:  5'- aGACcgGC-CCUGCucuGGUacaGACCCcaGACGGa -3'
miRNA:   3'- aCUG--UGuGGACGu--CCA---UUGGG--UUGCC- -5'
28760 5' -52.7 NC_006146.1 + 64227 0.67 0.970161
Target:  5'- aGGCACAUCUGCGccUGGgCCGggGCGGg -3'
miRNA:   3'- aCUGUGUGGACGUccAUUgGGU--UGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.