miRNA display CGI


Results 21 - 40 of 144 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28760 5' -52.7 NC_006146.1 + 130820 0.66 0.982451
Target:  5'- -aGCACGCgCUGCAGGcccUCCGcCGGg -3'
miRNA:   3'- acUGUGUG-GACGUCCauuGGGUuGCC- -5'
28760 5' -52.7 NC_006146.1 + 141313 0.66 0.982451
Target:  5'- gGGCugGCCUGCcagggggcaaAGGggGCUCAGaGGg -3'
miRNA:   3'- aCUGugUGGACG----------UCCauUGGGUUgCC- -5'
28760 5' -52.7 NC_006146.1 + 156702 0.66 0.982451
Target:  5'- gGGCugGCCUGCcagggggcaaAGGggGCUCAGaGGg -3'
miRNA:   3'- aCUGugUGGACG----------UCCauUGGGUUgCC- -5'
28760 5' -52.7 NC_006146.1 + 153625 0.66 0.982451
Target:  5'- gGGCugGCCUGCcagggggcaaAGGggGCUCAGaGGg -3'
miRNA:   3'- aCUGugUGGACG----------UCCauUGGGUUgCC- -5'
28760 5' -52.7 NC_006146.1 + 150547 0.66 0.982451
Target:  5'- gGGCugGCCUGCcagggggcaaAGGggGCUCAGaGGg -3'
miRNA:   3'- aCUGugUGGACG----------UCCauUGGGUUgCC- -5'
28760 5' -52.7 NC_006146.1 + 147469 0.66 0.982451
Target:  5'- gGGCugGCCUGCcagggggcaaAGGggGCUCAGaGGg -3'
miRNA:   3'- aCUGugUGGACG----------UCCauUGGGUUgCC- -5'
28760 5' -52.7 NC_006146.1 + 144391 0.66 0.982451
Target:  5'- gGGCugGCCUGCcagggggcaaAGGggGCUCAGaGGg -3'
miRNA:   3'- aCUGugUGGACG----------UCCauUGGGUUgCC- -5'
28760 5' -52.7 NC_006146.1 + 69782 0.66 0.982251
Target:  5'- aGAC-CACCUGCcacaggaAGGUGuCCUGGgGGa -3'
miRNA:   3'- aCUGuGUGGACG-------UCCAUuGGGUUgCC- -5'
28760 5' -52.7 NC_006146.1 + 111992 0.66 0.980367
Target:  5'- aUGGCcucGC-CCUGCAGGUcGCgCCAAaagUGGg -3'
miRNA:   3'- -ACUG---UGuGGACGUCCAuUG-GGUU---GCC- -5'
28760 5' -52.7 NC_006146.1 + 105751 0.66 0.980367
Target:  5'- -cACACACCUGgugAGGUGugCCAGgaaGGc -3'
miRNA:   3'- acUGUGUGGACg--UCCAUugGGUUg--CC- -5'
28760 5' -52.7 NC_006146.1 + 78005 0.66 0.980367
Target:  5'- gGACAgCACggggGguGGUGGCCUAGCaGGu -3'
miRNA:   3'- aCUGU-GUGga--CguCCAUUGGGUUG-CC- -5'
28760 5' -52.7 NC_006146.1 + 54026 0.66 0.980367
Target:  5'- aGGCACugCUGCGccUGGCCgGGcCGGa -3'
miRNA:   3'- aCUGUGugGACGUccAUUGGgUU-GCC- -5'
28760 5' -52.7 NC_006146.1 + 141421 0.66 0.980367
Target:  5'- gGACGgGCCUG-GGGUGGCCgGGgaGGg -3'
miRNA:   3'- aCUGUgUGGACgUCCAUUGGgUUg-CC- -5'
28760 5' -52.7 NC_006146.1 + 144499 0.66 0.980367
Target:  5'- gGACGgGCCUG-GGGUGGCCgGGgaGGg -3'
miRNA:   3'- aCUGUgUGGACgUCCAUUGGgUUg-CC- -5'
28760 5' -52.7 NC_006146.1 + 147577 0.66 0.980367
Target:  5'- gGACGgGCCUG-GGGUGGCCgGGgaGGg -3'
miRNA:   3'- aCUGUgUGGACgUCCAUUGGgUUg-CC- -5'
28760 5' -52.7 NC_006146.1 + 150655 0.66 0.980367
Target:  5'- gGACGgGCCUG-GGGUGGCCgGGgaGGg -3'
miRNA:   3'- aCUGUgUGGACgUCCAUUGGgUUg-CC- -5'
28760 5' -52.7 NC_006146.1 + 153732 0.66 0.980367
Target:  5'- gGACGgGCCUG-GGGUGGCCgGGgaGGg -3'
miRNA:   3'- aCUGUgUGGACgUCCAUUGGgUUg-CC- -5'
28760 5' -52.7 NC_006146.1 + 156810 0.66 0.980367
Target:  5'- gGACGgGCCUG-GGGUGGCCgGGgaGGg -3'
miRNA:   3'- aCUGUgUGGACgUCCAUUGGgUUg-CC- -5'
28760 5' -52.7 NC_006146.1 + 75821 0.66 0.978104
Target:  5'- cGAgGC-CCUGCGGGacauGCaCCAGgGGa -3'
miRNA:   3'- aCUgUGuGGACGUCCau--UG-GGUUgCC- -5'
28760 5' -52.7 NC_006146.1 + 50556 0.66 0.978104
Target:  5'- gGugGgCACCUGCAGGUuuCCaGACc- -3'
miRNA:   3'- aCugU-GUGGACGUCCAuuGGgUUGcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.