Results 21 - 40 of 144 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28760 | 5' | -52.7 | NC_006146.1 | + | 111503 | 0.68 | 0.944077 |
Target: 5'- aGACAUccaGCCUGCA-GUGGCCCAu--- -3' miRNA: 3'- aCUGUG---UGGACGUcCAUUGGGUugcc -5' |
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28760 | 5' | -52.7 | NC_006146.1 | + | 42164 | 0.69 | 0.929365 |
Target: 5'- gGACACccCCUGCGGG-AAUCCAAuccagUGGa -3' miRNA: 3'- aCUGUGu-GGACGUCCaUUGGGUU-----GCC- -5' |
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28760 | 5' | -52.7 | NC_006146.1 | + | 41586 | 0.7 | 0.879461 |
Target: 5'- cUGGCugGCCgagGCGGaGaGGCCCGGgGGg -3' miRNA: 3'- -ACUGugUGGa--CGUC-CaUUGGGUUgCC- -5' |
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28760 | 5' | -52.7 | NC_006146.1 | + | 58908 | 0.72 | 0.797424 |
Target: 5'- uUGGCGCgACCUGCAGGgcgAGgCCAugaacuCGGc -3' miRNA: 3'- -ACUGUG-UGGACGUCCa--UUgGGUu-----GCC- -5' |
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28760 | 5' | -52.7 | NC_006146.1 | + | 59029 | 0.67 | 0.973008 |
Target: 5'- gUGaACGCACCgcugGC-GGUGaggGCgCAGCGGg -3' miRNA: 3'- -AC-UGUGUGGa---CGuCCAU---UGgGUUGCC- -5' |
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28760 | 5' | -52.7 | NC_006146.1 | + | 8701 | 0.68 | 0.952679 |
Target: 5'- gUGACACGCCUuacuUGGGUcAGCCU-ACGGg -3' miRNA: 3'- -ACUGUGUGGAc---GUCCA-UUGGGuUGCC- -5' |
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28760 | 5' | -52.7 | NC_006146.1 | + | 71165 | 0.69 | 0.923972 |
Target: 5'- cGGCACugUggcuugggUGguGGUAGCCgGugGGc -3' miRNA: 3'- aCUGUGugG--------ACguCCAUUGGgUugCC- -5' |
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28760 | 5' | -52.7 | NC_006146.1 | + | 169169 | 0.81 | 0.378644 |
Target: 5'- gGGCcgGCGCCUGCAGGggGGgCCGGCGGg -3' miRNA: 3'- aCUG--UGUGGACGUCCa-UUgGGUUGCC- -5' |
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28760 | 5' | -52.7 | NC_006146.1 | + | 154684 | 0.68 | 0.947196 |
Target: 5'- gGGCGCugCUGCuggguGGUcugcgcccagaugcAGCCCAccaggGCGGc -3' miRNA: 3'- aCUGUGugGACGu----CCA--------------UUGGGU-----UGCC- -5' |
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28760 | 5' | -52.7 | NC_006146.1 | + | 168237 | 0.81 | 0.378644 |
Target: 5'- gGGCcgGCGCCUGCAGGggGGgCCGGCGGg -3' miRNA: 3'- aCUG--UGUGGACGUCCa-UUgGGUUGCC- -5' |
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28760 | 5' | -52.7 | NC_006146.1 | + | 147152 | 0.69 | 0.923972 |
Target: 5'- cGGC-CGCg-GCAGuUGACCCGGCGGc -3' miRNA: 3'- aCUGuGUGgaCGUCcAUUGGGUUGCC- -5' |
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28760 | 5' | -52.7 | NC_006146.1 | + | 129130 | 0.68 | 0.944077 |
Target: 5'- gGGCGC-CCgggcGCAGGgccUCCGGCGGg -3' miRNA: 3'- aCUGUGuGGa---CGUCCauuGGGUUGCC- -5' |
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28760 | 5' | -52.7 | NC_006146.1 | + | 57379 | 0.69 | 0.918335 |
Target: 5'- gGugGCGCCgGUGGGcUGGCCCcGCGa -3' miRNA: 3'- aCugUGUGGaCGUCC-AUUGGGuUGCc -5' |
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28760 | 5' | -52.7 | NC_006146.1 | + | 158931 | 0.7 | 0.893363 |
Target: 5'- cUGGCAgAaCUGCAGGUAauagGCgUAGCGGg -3' miRNA: 3'- -ACUGUgUgGACGUCCAU----UGgGUUGCC- -5' |
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28760 | 5' | -52.7 | NC_006146.1 | + | 146061 | 0.71 | 0.84086 |
Target: 5'- ---aGCACCUGCuuguuGGUGACCCGgACGu -3' miRNA: 3'- acugUGUGGACGu----CCAUUGGGU-UGCc -5' |
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28760 | 5' | -52.7 | NC_006146.1 | + | 49507 | 0.72 | 0.815317 |
Target: 5'- cGugGCAUCUggaucgGCGGGUGAUCCGGgGGc -3' miRNA: 3'- aCugUGUGGA------CGUCCAUUGGGUUgCC- -5' |
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28760 | 5' | -52.7 | NC_006146.1 | + | 50556 | 0.66 | 0.978104 |
Target: 5'- gGugGgCACCUGCAGGUuuCCaGACc- -3' miRNA: 3'- aCugU-GUGGACGUCCAuuGGgUUGcc -5' |
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28760 | 5' | -52.7 | NC_006146.1 | + | 153306 | 0.67 | 0.973008 |
Target: 5'- aGGCACcagGCCcggGcCAGGUcGCCCAGCa- -3' miRNA: 3'- aCUGUG---UGGa--C-GUCCAuUGGGUUGcc -5' |
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28760 | 5' | -52.7 | NC_006146.1 | + | 142177 | 0.68 | 0.960344 |
Target: 5'- aUGugGCugCUGCuGGUgcuaGACCCuaaauUGGa -3' miRNA: 3'- -ACugUGugGACGuCCA----UUGGGuu---GCC- -5' |
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28760 | 5' | -52.7 | NC_006146.1 | + | 119989 | 0.68 | 0.952679 |
Target: 5'- aGACACAUCUuggGCAcGGaGGCCCAggccgcacccGCGGc -3' miRNA: 3'- aCUGUGUGGA---CGU-CCaUUGGGU----------UGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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