miRNA display CGI


Results 21 - 40 of 144 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28760 5' -52.7 NC_006146.1 + 167305 0.81 0.378644
Target:  5'- gGGCcgGCGCCUGCAGGggGGgCCGGCGGg -3'
miRNA:   3'- aCUG--UGUGGACGUCCa-UUgGGUUGCC- -5'
28760 5' -52.7 NC_006146.1 + 149978 0.68 0.960344
Target:  5'- gGGCcaGgGCCUGCAGGUcGGCCgGACu- -3'
miRNA:   3'- aCUG--UgUGGACGUCCA-UUGGgUUGcc -5'
28760 5' -52.7 NC_006146.1 + 42830 0.68 0.956242
Target:  5'- --cCGCACCUGCAugaggccGGUggUCUuGCGGg -3'
miRNA:   3'- acuGUGUGGACGU-------CCAuuGGGuUGCC- -5'
28760 5' -52.7 NC_006146.1 + 138255 0.69 0.939416
Target:  5'- uUGGguUACCUGCAGGUGugUCcACaGGu -3'
miRNA:   3'- -ACUguGUGGACGUCCAUugGGuUG-CC- -5'
28760 5' -52.7 NC_006146.1 + 34425 0.7 0.899965
Target:  5'- uUGGguUACCUGCAGGUGugUCAccaGGu -3'
miRNA:   3'- -ACUguGUGGACGUCCAUugGGUug-CC- -5'
28760 5' -52.7 NC_006146.1 + 155810 0.67 0.973008
Target:  5'- gGGC-CACCgagucaaaCAGGUGAgUCAGCGGa -3'
miRNA:   3'- aCUGuGUGGac------GUCCAUUgGGUUGCC- -5'
28760 5' -52.7 NC_006146.1 + 109676 0.67 0.963835
Target:  5'- aGAC-CACCUcGCAguccGGU-ACCCGAuCGGg -3'
miRNA:   3'- aCUGuGUGGA-CGU----CCAuUGGGUU-GCC- -5'
28760 5' -52.7 NC_006146.1 + 43354 0.71 0.848996
Target:  5'- aGGCGCAgcCCgugGCaggGGGUGGCUUAGCGGg -3'
miRNA:   3'- aCUGUGU--GGa--CG---UCCAUUGGGUUGCC- -5'
28760 5' -52.7 NC_006146.1 + 156555 0.68 0.944077
Target:  5'- cGACccCACCaGCAGG--GCCgCAACGGc -3'
miRNA:   3'- aCUGu-GUGGaCGUCCauUGG-GUUGCC- -5'
28760 5' -52.7 NC_006146.1 + 111503 0.68 0.944077
Target:  5'- aGACAUccaGCCUGCA-GUGGCCCAu--- -3'
miRNA:   3'- aCUGUG---UGGACGUcCAUUGGGUugcc -5'
28760 5' -52.7 NC_006146.1 + 53670 0.72 0.835885
Target:  5'- aGACGCuCUUGCccAGGUAgaggaugucguccgcGCCUAGCGGg -3'
miRNA:   3'- aCUGUGuGGACG--UCCAU---------------UGGGUUGCC- -5'
28760 5' -52.7 NC_006146.1 + 111129 0.72 0.824013
Target:  5'- cGACAC-CCUcaaccccCAGGUGGCCgGGCGGc -3'
miRNA:   3'- aCUGUGuGGAc------GUCCAUUGGgUUGCC- -5'
28760 5' -52.7 NC_006146.1 + 151711 0.66 0.978104
Target:  5'- aGGCGCGCCUGCguagaaguAGGccugcuGCCCAaacACGu -3'
miRNA:   3'- aCUGUGUGGACG--------UCCau----UGGGU---UGCc -5'
28760 5' -52.7 NC_006146.1 + 151391 0.67 0.975397
Target:  5'- --cCGCugCUGCAGGcgggggaUGGCgCGGCGGc -3'
miRNA:   3'- acuGUGugGACGUCC-------AUUGgGUUGCC- -5'
28760 5' -52.7 NC_006146.1 + 119989 0.68 0.952679
Target:  5'- aGACACAUCUuggGCAcGGaGGCCCAggccgcacccGCGGc -3'
miRNA:   3'- aCUGUGUGGA---CGU-CCaUUGGGU----------UGCC- -5'
28760 5' -52.7 NC_006146.1 + 48637 0.69 0.918335
Target:  5'- gGGCGgGCUccggGCGGGU-GCCCAGCGc -3'
miRNA:   3'- aCUGUgUGGa---CGUCCAuUGGGUUGCc -5'
28760 5' -52.7 NC_006146.1 + 170101 0.7 0.899965
Target:  5'- gGGCcgGCGCC-GCAGGggGGgCCGGCGGg -3'
miRNA:   3'- aCUG--UGUGGaCGUCCa-UUgGGUUGCC- -5'
28760 5' -52.7 NC_006146.1 + 49507 0.72 0.815317
Target:  5'- cGugGCAUCUggaucgGCGGGUGAUCCGGgGGc -3'
miRNA:   3'- aCugUGUGGA------CGUCCAUUGGGUUgCC- -5'
28760 5' -52.7 NC_006146.1 + 54794 0.68 0.942241
Target:  5'- -aGCGCGCCUuggGCAGcucguuggagagGACCCGGCGGa -3'
miRNA:   3'- acUGUGUGGA---CGUCca----------UUGGGUUGCC- -5'
28760 5' -52.7 NC_006146.1 + 58173 0.68 0.945874
Target:  5'- cGAC-CACCUGCcuguacacgggccucAGGgacGCCCugcuGCGGg -3'
miRNA:   3'- aCUGuGUGGACG---------------UCCau-UGGGu---UGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.