miRNA display CGI


Results 1 - 20 of 144 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28760 5' -52.7 NC_006146.1 + 48637 0.69 0.918335
Target:  5'- gGGCGgGCUccggGCGGGU-GCCCAGCGc -3'
miRNA:   3'- aCUGUgUGGa---CGUCCAuUGGGUUGCc -5'
28760 5' -52.7 NC_006146.1 + 167305 0.81 0.378644
Target:  5'- gGGCcgGCGCCUGCAGGggGGgCCGGCGGg -3'
miRNA:   3'- aCUG--UGUGGACGUCCa-UUgGGUUGCC- -5'
28760 5' -52.7 NC_006146.1 + 168237 0.81 0.378644
Target:  5'- gGGCcgGCGCCUGCAGGggGGgCCGGCGGg -3'
miRNA:   3'- aCUG--UGUGGACGUCCa-UUgGGUUGCC- -5'
28760 5' -52.7 NC_006146.1 + 155331 0.71 0.848996
Target:  5'- cGACGCGCCUGUccucccAGG-GACCCGagACGa -3'
miRNA:   3'- aCUGUGUGGACG------UCCaUUGGGU--UGCc -5'
28760 5' -52.7 NC_006146.1 + 41586 0.7 0.879461
Target:  5'- cUGGCugGCCgagGCGGaGaGGCCCGGgGGg -3'
miRNA:   3'- -ACUGugUGGa--CGUC-CaUUGGGUUgCC- -5'
28760 5' -52.7 NC_006146.1 + 169169 0.81 0.378644
Target:  5'- gGGCcgGCGCCUGCAGGggGGgCCGGCGGg -3'
miRNA:   3'- aCUG--UGUGGACGUCCa-UUgGGUUGCC- -5'
28760 5' -52.7 NC_006146.1 + 53670 0.72 0.835885
Target:  5'- aGACGCuCUUGCccAGGUAgaggaugucguccgcGCCUAGCGGg -3'
miRNA:   3'- aCUGUGuGGACG--UCCAU---------------UGGGUUGCC- -5'
28760 5' -52.7 NC_006146.1 + 43354 0.71 0.848996
Target:  5'- aGGCGCAgcCCgugGCaggGGGUGGCUUAGCGGg -3'
miRNA:   3'- aCUGUGU--GGa--CG---UCCAUUGGGUUGCC- -5'
28760 5' -52.7 NC_006146.1 + 57379 0.69 0.918335
Target:  5'- gGugGCGCCgGUGGGcUGGCCCcGCGa -3'
miRNA:   3'- aCugUGUGGaCGUCC-AUUGGGuUGCc -5'
28760 5' -52.7 NC_006146.1 + 147152 0.69 0.923972
Target:  5'- cGGC-CGCg-GCAGuUGACCCGGCGGc -3'
miRNA:   3'- aCUGuGUGgaCGUCcAUUGGGUUGCC- -5'
28760 5' -52.7 NC_006146.1 + 46577 0.66 0.987711
Target:  5'- gUGGCguGCGCCaGCAGcGUcauGGCCaCGAUGGg -3'
miRNA:   3'- -ACUG--UGUGGaCGUC-CA---UUGG-GUUGCC- -5'
28760 5' -52.7 NC_006146.1 + 49507 0.72 0.815317
Target:  5'- cGugGCAUCUggaucgGCGGGUGAUCCGGgGGc -3'
miRNA:   3'- aCugUGUGGA------CGUCCAUUGGGUUgCC- -5'
28760 5' -52.7 NC_006146.1 + 58908 0.72 0.797424
Target:  5'- uUGGCGCgACCUGCAGGgcgAGgCCAugaacuCGGc -3'
miRNA:   3'- -ACUGUG-UGGACGUCCa--UUgGGUu-----GCC- -5'
28760 5' -52.7 NC_006146.1 + 34425 0.7 0.899965
Target:  5'- uUGGguUACCUGCAGGUGugUCAccaGGu -3'
miRNA:   3'- -ACUguGUGGACGUCCAUugGGUug-CC- -5'
28760 5' -52.7 NC_006146.1 + 170101 0.7 0.899965
Target:  5'- gGGCcgGCGCC-GCAGGggGGgCCGGCGGg -3'
miRNA:   3'- aCUG--UGUGGaCGUCCa-UUgGGUUGCC- -5'
28760 5' -52.7 NC_006146.1 + 111129 0.72 0.824013
Target:  5'- cGACAC-CCUcaaccccCAGGUGGCCgGGCGGc -3'
miRNA:   3'- aCUGUGuGGAc------GUCCAUUGGgUUGCC- -5'
28760 5' -52.7 NC_006146.1 + 71165 0.69 0.923972
Target:  5'- cGGCACugUggcuugggUGguGGUAGCCgGugGGc -3'
miRNA:   3'- aCUGUGugG--------ACguCCAUUGGgUugCC- -5'
28760 5' -52.7 NC_006146.1 + 42164 0.69 0.929365
Target:  5'- gGACACccCCUGCGGG-AAUCCAAuccagUGGa -3'
miRNA:   3'- aCUGUGu-GGACGUCCaUUGGGUU-----GCC- -5'
28760 5' -52.7 NC_006146.1 + 146061 0.71 0.84086
Target:  5'- ---aGCACCUGCuuguuGGUGACCCGgACGu -3'
miRNA:   3'- acugUGUGGACGu----CCAUUGGGU-UGCc -5'
28760 5' -52.7 NC_006146.1 + 158931 0.7 0.893363
Target:  5'- cUGGCAgAaCUGCAGGUAauagGCgUAGCGGg -3'
miRNA:   3'- -ACUGUgUgGACGUCCAU----UGgGUUGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.