miRNA display CGI


Results 1 - 20 of 144 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28760 5' -52.7 NC_006146.1 + 136479 1.12 0.004435
Target:  5'- gUGACACACCUGCAGGUAACCCAACGGg -3'
miRNA:   3'- -ACUGUGUGGACGUCCAUUGGGUUGCC- -5'
28760 5' -52.7 NC_006146.1 + 32650 1.11 0.005249
Target:  5'- gGACACACCUGCAGGUAACCCAACGGg -3'
miRNA:   3'- aCUGUGUGGACGUCCAUUGGGUUGCC- -5'
28760 5' -52.7 NC_006146.1 + 167305 0.81 0.378644
Target:  5'- gGGCcgGCGCCUGCAGGggGGgCCGGCGGg -3'
miRNA:   3'- aCUG--UGUGGACGUCCa-UUgGGUUGCC- -5'
28760 5' -52.7 NC_006146.1 + 168237 0.81 0.378644
Target:  5'- gGGCcgGCGCCUGCAGGggGGgCCGGCGGg -3'
miRNA:   3'- aCUG--UGUGGACGUCCa-UUgGGUUGCC- -5'
28760 5' -52.7 NC_006146.1 + 169169 0.81 0.378644
Target:  5'- gGGCcgGCGCCUGCAGGggGGgCCGGCGGg -3'
miRNA:   3'- aCUG--UGUGGACGUCCa-UUgGGUUGCC- -5'
28760 5' -52.7 NC_006146.1 + 42280 0.77 0.546089
Target:  5'- gGGCgACACCggggagGcCAGGUAGCCCAGCGc -3'
miRNA:   3'- aCUG-UGUGGa-----C-GUCCAUUGGGUUGCc -5'
28760 5' -52.7 NC_006146.1 + 131740 0.74 0.690077
Target:  5'- aGACACggACCUGCuGGgagGACCCGGCc- -3'
miRNA:   3'- aCUGUG--UGGACGuCCa--UUGGGUUGcc -5'
28760 5' -52.7 NC_006146.1 + 14316 0.74 0.700271
Target:  5'- cUGGCGCACCUGCuGGagAACUCAcgcagggccguuGCGGc -3'
miRNA:   3'- -ACUGUGUGGACGuCCa-UUGGGU------------UGCC- -5'
28760 5' -52.7 NC_006146.1 + 65153 0.74 0.719472
Target:  5'- cUGGCACACCUcacCAGGUGuguguauGCCCucuauGCGGa -3'
miRNA:   3'- -ACUGUGUGGAc--GUCCAU-------UGGGu----UGCC- -5'
28760 5' -52.7 NC_006146.1 + 148369 0.73 0.749199
Target:  5'- aGACcaggaggACGCCUGgAGGcgGACCCGAgGGg -3'
miRNA:   3'- aCUG-------UGUGGACgUCCa-UUGGGUUgCC- -5'
28760 5' -52.7 NC_006146.1 + 142213 0.73 0.749199
Target:  5'- aGACcaggaggACGCCUGgAGGcgGACCCGAgGGg -3'
miRNA:   3'- aCUG-------UGUGGACgUCCa-UUGGGUUgCC- -5'
28760 5' -52.7 NC_006146.1 + 151447 0.73 0.749199
Target:  5'- aGACcaggaggACGCCUGgAGGcgGACCCGAgGGg -3'
miRNA:   3'- aCUG-------UGUGGACgUCCa-UUGGGUUgCC- -5'
28760 5' -52.7 NC_006146.1 + 157603 0.73 0.749199
Target:  5'- aGACcaggaggACGCCUGgAGGcgGACCCGAgGGg -3'
miRNA:   3'- aCUG-------UGUGGACgUCCa-UUGGGUUgCC- -5'
28760 5' -52.7 NC_006146.1 + 145291 0.73 0.749199
Target:  5'- aGACcaggaggACGCCUGgAGGcgGACCCGAgGGg -3'
miRNA:   3'- aCUG-------UGUGGACgUCCa-UUGGGUUgCC- -5'
28760 5' -52.7 NC_006146.1 + 154525 0.73 0.749199
Target:  5'- aGACcaggaggACGCCUGgAGGcgGACCCGAgGGg -3'
miRNA:   3'- aCUG-------UGUGGACgUCCa-UUGGGUUgCC- -5'
28760 5' -52.7 NC_006146.1 + 58908 0.72 0.797424
Target:  5'- uUGGCGCgACCUGCAGGgcgAGgCCAugaacuCGGc -3'
miRNA:   3'- -ACUGUG-UGGACGUCCa--UUgGGUu-----GCC- -5'
28760 5' -52.7 NC_006146.1 + 61309 0.72 0.797424
Target:  5'- cGGCGCGcggcguCCUGCccGGGUGGCCUAGcCGGc -3'
miRNA:   3'- aCUGUGU------GGACG--UCCAUUGGGUU-GCC- -5'
28760 5' -52.7 NC_006146.1 + 110998 0.72 0.814438
Target:  5'- -cGCGCACCaGCAGGUuggccagcgugcuGGCCCGcGCGGc -3'
miRNA:   3'- acUGUGUGGaCGUCCA-------------UUGGGU-UGCC- -5'
28760 5' -52.7 NC_006146.1 + 49507 0.72 0.815317
Target:  5'- cGugGCAUCUggaucgGCGGGUGAUCCGGgGGc -3'
miRNA:   3'- aCugUGUGGA------CGUCCAUUGGGUUgCC- -5'
28760 5' -52.7 NC_006146.1 + 111129 0.72 0.824013
Target:  5'- cGACAC-CCUcaaccccCAGGUGGCCgGGCGGc -3'
miRNA:   3'- aCUGUGuGGAc------GUCCAUUGGgUUGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.