Results 1 - 20 of 144 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28760 | 5' | -52.7 | NC_006146.1 | + | 136479 | 1.12 | 0.004435 |
Target: 5'- gUGACACACCUGCAGGUAACCCAACGGg -3' miRNA: 3'- -ACUGUGUGGACGUCCAUUGGGUUGCC- -5' |
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28760 | 5' | -52.7 | NC_006146.1 | + | 32650 | 1.11 | 0.005249 |
Target: 5'- gGACACACCUGCAGGUAACCCAACGGg -3' miRNA: 3'- aCUGUGUGGACGUCCAUUGGGUUGCC- -5' |
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28760 | 5' | -52.7 | NC_006146.1 | + | 167305 | 0.81 | 0.378644 |
Target: 5'- gGGCcgGCGCCUGCAGGggGGgCCGGCGGg -3' miRNA: 3'- aCUG--UGUGGACGUCCa-UUgGGUUGCC- -5' |
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28760 | 5' | -52.7 | NC_006146.1 | + | 169169 | 0.81 | 0.378644 |
Target: 5'- gGGCcgGCGCCUGCAGGggGGgCCGGCGGg -3' miRNA: 3'- aCUG--UGUGGACGUCCa-UUgGGUUGCC- -5' |
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28760 | 5' | -52.7 | NC_006146.1 | + | 168237 | 0.81 | 0.378644 |
Target: 5'- gGGCcgGCGCCUGCAGGggGGgCCGGCGGg -3' miRNA: 3'- aCUG--UGUGGACGUCCa-UUgGGUUGCC- -5' |
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28760 | 5' | -52.7 | NC_006146.1 | + | 42280 | 0.77 | 0.546089 |
Target: 5'- gGGCgACACCggggagGcCAGGUAGCCCAGCGc -3' miRNA: 3'- aCUG-UGUGGa-----C-GUCCAUUGGGUUGCc -5' |
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28760 | 5' | -52.7 | NC_006146.1 | + | 131740 | 0.74 | 0.690077 |
Target: 5'- aGACACggACCUGCuGGgagGACCCGGCc- -3' miRNA: 3'- aCUGUG--UGGACGuCCa--UUGGGUUGcc -5' |
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28760 | 5' | -52.7 | NC_006146.1 | + | 14316 | 0.74 | 0.700271 |
Target: 5'- cUGGCGCACCUGCuGGagAACUCAcgcagggccguuGCGGc -3' miRNA: 3'- -ACUGUGUGGACGuCCa-UUGGGU------------UGCC- -5' |
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28760 | 5' | -52.7 | NC_006146.1 | + | 65153 | 0.74 | 0.719472 |
Target: 5'- cUGGCACACCUcacCAGGUGuguguauGCCCucuauGCGGa -3' miRNA: 3'- -ACUGUGUGGAc--GUCCAU-------UGGGu----UGCC- -5' |
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28760 | 5' | -52.7 | NC_006146.1 | + | 142213 | 0.73 | 0.749199 |
Target: 5'- aGACcaggaggACGCCUGgAGGcgGACCCGAgGGg -3' miRNA: 3'- aCUG-------UGUGGACgUCCa-UUGGGUUgCC- -5' |
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28760 | 5' | -52.7 | NC_006146.1 | + | 151447 | 0.73 | 0.749199 |
Target: 5'- aGACcaggaggACGCCUGgAGGcgGACCCGAgGGg -3' miRNA: 3'- aCUG-------UGUGGACgUCCa-UUGGGUUgCC- -5' |
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28760 | 5' | -52.7 | NC_006146.1 | + | 148369 | 0.73 | 0.749199 |
Target: 5'- aGACcaggaggACGCCUGgAGGcgGACCCGAgGGg -3' miRNA: 3'- aCUG-------UGUGGACgUCCa-UUGGGUUgCC- -5' |
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28760 | 5' | -52.7 | NC_006146.1 | + | 154525 | 0.73 | 0.749199 |
Target: 5'- aGACcaggaggACGCCUGgAGGcgGACCCGAgGGg -3' miRNA: 3'- aCUG-------UGUGGACgUCCa-UUGGGUUgCC- -5' |
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28760 | 5' | -52.7 | NC_006146.1 | + | 157603 | 0.73 | 0.749199 |
Target: 5'- aGACcaggaggACGCCUGgAGGcgGACCCGAgGGg -3' miRNA: 3'- aCUG-------UGUGGACgUCCa-UUGGGUUgCC- -5' |
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28760 | 5' | -52.7 | NC_006146.1 | + | 145291 | 0.73 | 0.749199 |
Target: 5'- aGACcaggaggACGCCUGgAGGcgGACCCGAgGGg -3' miRNA: 3'- aCUG-------UGUGGACgUCCa-UUGGGUUgCC- -5' |
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28760 | 5' | -52.7 | NC_006146.1 | + | 61309 | 0.72 | 0.797424 |
Target: 5'- cGGCGCGcggcguCCUGCccGGGUGGCCUAGcCGGc -3' miRNA: 3'- aCUGUGU------GGACG--UCCAUUGGGUU-GCC- -5' |
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28760 | 5' | -52.7 | NC_006146.1 | + | 58908 | 0.72 | 0.797424 |
Target: 5'- uUGGCGCgACCUGCAGGgcgAGgCCAugaacuCGGc -3' miRNA: 3'- -ACUGUG-UGGACGUCCa--UUgGGUu-----GCC- -5' |
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28760 | 5' | -52.7 | NC_006146.1 | + | 110998 | 0.72 | 0.814438 |
Target: 5'- -cGCGCACCaGCAGGUuggccagcgugcuGGCCCGcGCGGc -3' miRNA: 3'- acUGUGUGGaCGUCCA-------------UUGGGU-UGCC- -5' |
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28760 | 5' | -52.7 | NC_006146.1 | + | 49507 | 0.72 | 0.815317 |
Target: 5'- cGugGCAUCUggaucgGCGGGUGAUCCGGgGGc -3' miRNA: 3'- aCugUGUGGA------CGUCCAUUGGGUUgCC- -5' |
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28760 | 5' | -52.7 | NC_006146.1 | + | 111129 | 0.72 | 0.824013 |
Target: 5'- cGACAC-CCUcaaccccCAGGUGGCCgGGCGGc -3' miRNA: 3'- aCUGUGuGGAc------GUCCAUUGGgUUGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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