miRNA display CGI


Results 1 - 20 of 144 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28760 5' -52.7 NC_006146.1 + 452 0.68 0.948497
Target:  5'- gGACACGCCccCGGGUccCCCGGCa- -3'
miRNA:   3'- aCUGUGUGGacGUCCAuuGGGUUGcc -5'
28760 5' -52.7 NC_006146.1 + 877 0.66 0.984364
Target:  5'- gGACugGCC-GCGGG-AGCa-GACGGg -3'
miRNA:   3'- aCUGugUGGaCGUCCaUUGggUUGCC- -5'
28760 5' -52.7 NC_006146.1 + 1383 0.68 0.948497
Target:  5'- gGACACGCCccCGGGUccCCCGGCa- -3'
miRNA:   3'- aCUGUGUGGacGUCCAuuGGGUUGcc -5'
28760 5' -52.7 NC_006146.1 + 1809 0.66 0.984364
Target:  5'- gGACugGCC-GCGGG-AGCa-GACGGg -3'
miRNA:   3'- aCUGugUGGaCGUCCaUUGggUUGCC- -5'
28760 5' -52.7 NC_006146.1 + 2315 0.68 0.948497
Target:  5'- gGACACGCCccCGGGUccCCCGGCa- -3'
miRNA:   3'- aCUGUGUGGacGUCCAuuGGGUUGcc -5'
28760 5' -52.7 NC_006146.1 + 2741 0.66 0.984364
Target:  5'- gGACugGCC-GCGGG-AGCa-GACGGg -3'
miRNA:   3'- aCUGugUGGaCGUCCaUUGggUUGCC- -5'
28760 5' -52.7 NC_006146.1 + 3247 0.68 0.948497
Target:  5'- gGACACGCCccCGGGUccCCCGGCa- -3'
miRNA:   3'- aCUGUGUGGacGUCCAuuGGGUUGcc -5'
28760 5' -52.7 NC_006146.1 + 3673 0.66 0.984364
Target:  5'- gGACugGCC-GCGGG-AGCa-GACGGg -3'
miRNA:   3'- aCUGugUGGaCGUCCaUUGggUUGCC- -5'
28760 5' -52.7 NC_006146.1 + 8701 0.68 0.952679
Target:  5'- gUGACACGCCUuacuUGGGUcAGCCU-ACGGg -3'
miRNA:   3'- -ACUGUGUGGAc---GUCCA-UUGGGuUGCC- -5'
28760 5' -52.7 NC_006146.1 + 12787 0.7 0.90633
Target:  5'- gGACGCGgcCCUGCAGGggcgGACguacggaCGGCGGc -3'
miRNA:   3'- aCUGUGU--GGACGUCCa---UUGg------GUUGCC- -5'
28760 5' -52.7 NC_006146.1 + 14316 0.74 0.700271
Target:  5'- cUGGCGCACCUGCuGGagAACUCAcgcagggccguuGCGGc -3'
miRNA:   3'- -ACUGUGUGGACGuCCa-UUGGGU------------UGCC- -5'
28760 5' -52.7 NC_006146.1 + 15033 0.68 0.956627
Target:  5'- aGGgGCGCCUGgcCAGG--GCCCGcCGGg -3'
miRNA:   3'- aCUgUGUGGAC--GUCCauUGGGUuGCC- -5'
28760 5' -52.7 NC_006146.1 + 15089 0.69 0.918335
Target:  5'- cUGACuCACCUGUuugacucGGUGGCCCccagggccaccgAGCGGc -3'
miRNA:   3'- -ACUGuGUGGACGu------CCAUUGGG------------UUGCC- -5'
28760 5' -52.7 NC_006146.1 + 21684 0.68 0.960344
Target:  5'- uUGACaaACugCUGCAGGggGCggCCAACa- -3'
miRNA:   3'- -ACUG--UGugGACGUCCauUG--GGUUGcc -5'
28760 5' -52.7 NC_006146.1 + 27314 0.67 0.967105
Target:  5'- aGACAUGCCUGCuucaacUGGCCCuccaaaaacAGCGGg -3'
miRNA:   3'- aCUGUGUGGACGucc---AUUGGG---------UUGCC- -5'
28760 5' -52.7 NC_006146.1 + 32650 1.11 0.005249
Target:  5'- gGACACACCUGCAGGUAACCCAACGGg -3'
miRNA:   3'- aCUGUGUGGACGUCCAUUGGGUUGCC- -5'
28760 5' -52.7 NC_006146.1 + 34425 0.7 0.899965
Target:  5'- uUGGguUACCUGCAGGUGugUCAccaGGu -3'
miRNA:   3'- -ACUguGUGGACGUCCAUugGGUug-CC- -5'
28760 5' -52.7 NC_006146.1 + 35964 0.68 0.952679
Target:  5'- gGGCugACCUgccguugcGCAGG--GCCCAaugucaGCGGg -3'
miRNA:   3'- aCUGugUGGA--------CGUCCauUGGGU------UGCC- -5'
28760 5' -52.7 NC_006146.1 + 36953 0.67 0.972455
Target:  5'- gUGGCugGCagucacugcgucaCUGUAGGUGaacugcgGCCCAcCGGg -3'
miRNA:   3'- -ACUGugUG-------------GACGUCCAU-------UGGGUuGCC- -5'
28760 5' -52.7 NC_006146.1 + 38919 0.69 0.929365
Target:  5'- -aACACACCUGCAGuGUu-CCCAAg-- -3'
miRNA:   3'- acUGUGUGGACGUC-CAuuGGGUUgcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.