Results 1 - 20 of 144 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28760 | 5' | -52.7 | NC_006146.1 | + | 452 | 0.68 | 0.948497 |
Target: 5'- gGACACGCCccCGGGUccCCCGGCa- -3' miRNA: 3'- aCUGUGUGGacGUCCAuuGGGUUGcc -5' |
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28760 | 5' | -52.7 | NC_006146.1 | + | 877 | 0.66 | 0.984364 |
Target: 5'- gGACugGCC-GCGGG-AGCa-GACGGg -3' miRNA: 3'- aCUGugUGGaCGUCCaUUGggUUGCC- -5' |
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28760 | 5' | -52.7 | NC_006146.1 | + | 1383 | 0.68 | 0.948497 |
Target: 5'- gGACACGCCccCGGGUccCCCGGCa- -3' miRNA: 3'- aCUGUGUGGacGUCCAuuGGGUUGcc -5' |
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28760 | 5' | -52.7 | NC_006146.1 | + | 1809 | 0.66 | 0.984364 |
Target: 5'- gGACugGCC-GCGGG-AGCa-GACGGg -3' miRNA: 3'- aCUGugUGGaCGUCCaUUGggUUGCC- -5' |
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28760 | 5' | -52.7 | NC_006146.1 | + | 2315 | 0.68 | 0.948497 |
Target: 5'- gGACACGCCccCGGGUccCCCGGCa- -3' miRNA: 3'- aCUGUGUGGacGUCCAuuGGGUUGcc -5' |
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28760 | 5' | -52.7 | NC_006146.1 | + | 2741 | 0.66 | 0.984364 |
Target: 5'- gGACugGCC-GCGGG-AGCa-GACGGg -3' miRNA: 3'- aCUGugUGGaCGUCCaUUGggUUGCC- -5' |
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28760 | 5' | -52.7 | NC_006146.1 | + | 3247 | 0.68 | 0.948497 |
Target: 5'- gGACACGCCccCGGGUccCCCGGCa- -3' miRNA: 3'- aCUGUGUGGacGUCCAuuGGGUUGcc -5' |
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28760 | 5' | -52.7 | NC_006146.1 | + | 3673 | 0.66 | 0.984364 |
Target: 5'- gGACugGCC-GCGGG-AGCa-GACGGg -3' miRNA: 3'- aCUGugUGGaCGUCCaUUGggUUGCC- -5' |
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28760 | 5' | -52.7 | NC_006146.1 | + | 8701 | 0.68 | 0.952679 |
Target: 5'- gUGACACGCCUuacuUGGGUcAGCCU-ACGGg -3' miRNA: 3'- -ACUGUGUGGAc---GUCCA-UUGGGuUGCC- -5' |
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28760 | 5' | -52.7 | NC_006146.1 | + | 12787 | 0.7 | 0.90633 |
Target: 5'- gGACGCGgcCCUGCAGGggcgGACguacggaCGGCGGc -3' miRNA: 3'- aCUGUGU--GGACGUCCa---UUGg------GUUGCC- -5' |
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28760 | 5' | -52.7 | NC_006146.1 | + | 14316 | 0.74 | 0.700271 |
Target: 5'- cUGGCGCACCUGCuGGagAACUCAcgcagggccguuGCGGc -3' miRNA: 3'- -ACUGUGUGGACGuCCa-UUGGGU------------UGCC- -5' |
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28760 | 5' | -52.7 | NC_006146.1 | + | 15033 | 0.68 | 0.956627 |
Target: 5'- aGGgGCGCCUGgcCAGG--GCCCGcCGGg -3' miRNA: 3'- aCUgUGUGGAC--GUCCauUGGGUuGCC- -5' |
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28760 | 5' | -52.7 | NC_006146.1 | + | 15089 | 0.69 | 0.918335 |
Target: 5'- cUGACuCACCUGUuugacucGGUGGCCCccagggccaccgAGCGGc -3' miRNA: 3'- -ACUGuGUGGACGu------CCAUUGGG------------UUGCC- -5' |
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28760 | 5' | -52.7 | NC_006146.1 | + | 21684 | 0.68 | 0.960344 |
Target: 5'- uUGACaaACugCUGCAGGggGCggCCAACa- -3' miRNA: 3'- -ACUG--UGugGACGUCCauUG--GGUUGcc -5' |
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28760 | 5' | -52.7 | NC_006146.1 | + | 27314 | 0.67 | 0.967105 |
Target: 5'- aGACAUGCCUGCuucaacUGGCCCuccaaaaacAGCGGg -3' miRNA: 3'- aCUGUGUGGACGucc---AUUGGG---------UUGCC- -5' |
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28760 | 5' | -52.7 | NC_006146.1 | + | 32650 | 1.11 | 0.005249 |
Target: 5'- gGACACACCUGCAGGUAACCCAACGGg -3' miRNA: 3'- aCUGUGUGGACGUCCAUUGGGUUGCC- -5' |
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28760 | 5' | -52.7 | NC_006146.1 | + | 34425 | 0.7 | 0.899965 |
Target: 5'- uUGGguUACCUGCAGGUGugUCAccaGGu -3' miRNA: 3'- -ACUguGUGGACGUCCAUugGGUug-CC- -5' |
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28760 | 5' | -52.7 | NC_006146.1 | + | 35964 | 0.68 | 0.952679 |
Target: 5'- gGGCugACCUgccguugcGCAGG--GCCCAaugucaGCGGg -3' miRNA: 3'- aCUGugUGGA--------CGUCCauUGGGU------UGCC- -5' |
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28760 | 5' | -52.7 | NC_006146.1 | + | 36953 | 0.67 | 0.972455 |
Target: 5'- gUGGCugGCagucacugcgucaCUGUAGGUGaacugcgGCCCAcCGGg -3' miRNA: 3'- -ACUGugUG-------------GACGUCCAU-------UGGGUuGCC- -5' |
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28760 | 5' | -52.7 | NC_006146.1 | + | 38919 | 0.69 | 0.929365 |
Target: 5'- -aACACACCUGCAGuGUu-CCCAAg-- -3' miRNA: 3'- acUGUGUGGACGUC-CAuuGGGUUgcc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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