miRNA display CGI


Results 1 - 20 of 144 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28760 5' -52.7 NC_006146.1 + 170101 0.7 0.899965
Target:  5'- gGGCcgGCGCC-GCAGGggGGgCCGGCGGg -3'
miRNA:   3'- aCUG--UGUGGaCGUCCa-UUgGGUUGCC- -5'
28760 5' -52.7 NC_006146.1 + 169169 0.81 0.378644
Target:  5'- gGGCcgGCGCCUGCAGGggGGgCCGGCGGg -3'
miRNA:   3'- aCUG--UGUGGACGUCCa-UUgGGUUGCC- -5'
28760 5' -52.7 NC_006146.1 + 168237 0.81 0.378644
Target:  5'- gGGCcgGCGCCUGCAGGggGGgCCGGCGGg -3'
miRNA:   3'- aCUG--UGUGGACGUCCa-UUgGGUUGCC- -5'
28760 5' -52.7 NC_006146.1 + 167305 0.81 0.378644
Target:  5'- gGGCcgGCGCCUGCAGGggGGgCCGGCGGg -3'
miRNA:   3'- aCUG--UGUGGACGUCCa-UUgGGUUGCC- -5'
28760 5' -52.7 NC_006146.1 + 167246 0.66 0.986115
Target:  5'- gUGACagaACGCUggugagGCAGG-AGCUCAGCGa -3'
miRNA:   3'- -ACUG---UGUGGa-----CGUCCaUUGGGUUGCc -5'
28760 5' -52.7 NC_006146.1 + 162384 0.67 0.967105
Target:  5'- uUGGCGCGCCcGCGcccGGgacCCCggUGGg -3'
miRNA:   3'- -ACUGUGUGGaCGU---CCauuGGGuuGCC- -5'
28760 5' -52.7 NC_006146.1 + 161434 0.68 0.960344
Target:  5'- gUGugGC-CCcGCGGG-AACCCAaggcgcgugggGCGGg -3'
miRNA:   3'- -ACugUGuGGaCGUCCaUUGGGU-----------UGCC- -5'
28760 5' -52.7 NC_006146.1 + 158931 0.7 0.893363
Target:  5'- cUGGCAgAaCUGCAGGUAauagGCgUAGCGGg -3'
miRNA:   3'- -ACUGUgUgGACGUCCAU----UGgGUUGCC- -5'
28760 5' -52.7 NC_006146.1 + 157603 0.73 0.749199
Target:  5'- aGACcaggaggACGCCUGgAGGcgGACCCGAgGGg -3'
miRNA:   3'- aCUG-------UGUGGACgUCCa-UUGGGUUgCC- -5'
28760 5' -52.7 NC_006146.1 + 157047 0.69 0.939416
Target:  5'- cUGGCACACCggGCcgccgGGGUcccuccggccGGCCUGAUGGa -3'
miRNA:   3'- -ACUGUGUGGa-CG-----UCCA----------UUGGGUUGCC- -5'
28760 5' -52.7 NC_006146.1 + 156862 0.66 0.984364
Target:  5'- gGGcCugGCCUGCGGGgGACagggugGACGGg -3'
miRNA:   3'- aCU-GugUGGACGUCCaUUGgg----UUGCC- -5'
28760 5' -52.7 NC_006146.1 + 156810 0.66 0.980367
Target:  5'- gGACGgGCCUG-GGGUGGCCgGGgaGGg -3'
miRNA:   3'- aCUGUgUGGACgUCCAUUGGgUUg-CC- -5'
28760 5' -52.7 NC_006146.1 + 156702 0.66 0.982451
Target:  5'- gGGCugGCCUGCcagggggcaaAGGggGCUCAGaGGg -3'
miRNA:   3'- aCUGugUGGACG----------UCCauUGGGUUgCC- -5'
28760 5' -52.7 NC_006146.1 + 156555 0.68 0.944077
Target:  5'- cGACccCACCaGCAGG--GCCgCAACGGc -3'
miRNA:   3'- aCUGu-GUGGaCGUCCauUGG-GUUGCC- -5'
28760 5' -52.7 NC_006146.1 + 155810 0.67 0.973008
Target:  5'- gGGC-CACCgagucaaaCAGGUGAgUCAGCGGa -3'
miRNA:   3'- aCUGuGUGGac------GUCCAUUgGGUUGCC- -5'
28760 5' -52.7 NC_006146.1 + 155331 0.71 0.848996
Target:  5'- cGACGCGCCUGUccucccAGG-GACCCGagACGa -3'
miRNA:   3'- aCUGUGUGGACG------UCCaUUGGGU--UGCc -5'
28760 5' -52.7 NC_006146.1 + 154684 0.68 0.947196
Target:  5'- gGGCGCugCUGCuggguGGUcugcgcccagaugcAGCCCAccaggGCGGc -3'
miRNA:   3'- aCUGUGugGACGu----CCA--------------UUGGGU-----UGCC- -5'
28760 5' -52.7 NC_006146.1 + 154525 0.73 0.749199
Target:  5'- aGACcaggaggACGCCUGgAGGcgGACCCGAgGGg -3'
miRNA:   3'- aCUG-------UGUGGACgUCCa-UUGGGUUgCC- -5'
28760 5' -52.7 NC_006146.1 + 153969 0.69 0.939416
Target:  5'- cUGGCACACCggGCcgccgGGGUcccuccggccGGCCUGAUGGa -3'
miRNA:   3'- -ACUGUGUGGa-CG-----UCCA----------UUGGGUUGCC- -5'
28760 5' -52.7 NC_006146.1 + 153784 0.66 0.984364
Target:  5'- gGGcCugGCCUGCGGGgGACagggugGACGGg -3'
miRNA:   3'- aCU-GugUGGACGUCCaUUGgg----UUGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.