miRNA display CGI


Results 21 - 40 of 144 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28760 5' -52.7 NC_006146.1 + 41239 0.67 0.970161
Target:  5'- aGACcgGC-CCUGCucuGGUacaGACCCcaGACGGa -3'
miRNA:   3'- aCUG--UGuGGACGu--CCA---UUGGG--UUGCC- -5'
28760 5' -52.7 NC_006146.1 + 41274 0.69 0.923972
Target:  5'- aGcACGCGCCcGCGGagGACCCGGCGa -3'
miRNA:   3'- aC-UGUGUGGaCGUCcaUUGGGUUGCc -5'
28760 5' -52.7 NC_006146.1 + 41586 0.7 0.879461
Target:  5'- cUGGCugGCCgagGCGGaGaGGCCCGGgGGg -3'
miRNA:   3'- -ACUGugUGGa--CGUC-CaUUGGGUUgCC- -5'
28760 5' -52.7 NC_006146.1 + 42164 0.69 0.929365
Target:  5'- gGACACccCCUGCGGG-AAUCCAAuccagUGGa -3'
miRNA:   3'- aCUGUGu-GGACGUCCaUUGGGUU-----GCC- -5'
28760 5' -52.7 NC_006146.1 + 42280 0.77 0.546089
Target:  5'- gGGCgACACCggggagGcCAGGUAGCCCAGCGc -3'
miRNA:   3'- aCUG-UGUGGa-----C-GUCCAUUGGGUUGCc -5'
28760 5' -52.7 NC_006146.1 + 42830 0.68 0.956242
Target:  5'- --cCGCACCUGCAugaggccGGUggUCUuGCGGg -3'
miRNA:   3'- acuGUGUGGACGU-------CCAuuGGGuUGCC- -5'
28760 5' -52.7 NC_006146.1 + 43270 0.68 0.958141
Target:  5'- aGGCACAgggcggccuggagguCCgGCAGGU-GCCUAGCGu -3'
miRNA:   3'- aCUGUGU---------------GGaCGUCCAuUGGGUUGCc -5'
28760 5' -52.7 NC_006146.1 + 43354 0.71 0.848996
Target:  5'- aGGCGCAgcCCgugGCaggGGGUGGCUUAGCGGg -3'
miRNA:   3'- aCUGUGU--GGa--CG---UCCAUUGGGUUGCC- -5'
28760 5' -52.7 NC_006146.1 + 46577 0.66 0.987711
Target:  5'- gUGGCguGCGCCaGCAGcGUcauGGCCaCGAUGGg -3'
miRNA:   3'- -ACUG--UGUGGaCGUC-CA---UUGG-GUUGCC- -5'
28760 5' -52.7 NC_006146.1 + 48227 0.66 0.982451
Target:  5'- cUGGCGCGCCU--GGGUGagcGCCgcGCGGa -3'
miRNA:   3'- -ACUGUGUGGAcgUCCAU---UGGguUGCC- -5'
28760 5' -52.7 NC_006146.1 + 48637 0.69 0.918335
Target:  5'- gGGCGgGCUccggGCGGGU-GCCCAGCGc -3'
miRNA:   3'- aCUGUgUGGa---CGUCCAuUGGGUUGCc -5'
28760 5' -52.7 NC_006146.1 + 49507 0.72 0.815317
Target:  5'- cGugGCAUCUggaucgGCGGGUGAUCCGGgGGc -3'
miRNA:   3'- aCugUGUGGA------CGUCCAUUGGGUUgCC- -5'
28760 5' -52.7 NC_006146.1 + 50556 0.66 0.978104
Target:  5'- gGugGgCACCUGCAGGUuuCCaGACc- -3'
miRNA:   3'- aCugU-GUGGACGUCCAuuGGgUUGcc -5'
28760 5' -52.7 NC_006146.1 + 53670 0.72 0.835885
Target:  5'- aGACGCuCUUGCccAGGUAgaggaugucguccgcGCCUAGCGGg -3'
miRNA:   3'- aCUGUGuGGACG--UCCAU---------------UGGGUUGCC- -5'
28760 5' -52.7 NC_006146.1 + 54026 0.66 0.980367
Target:  5'- aGGCACugCUGCGccUGGCCgGGcCGGa -3'
miRNA:   3'- aCUGUGugGACGUccAUUGGgUU-GCC- -5'
28760 5' -52.7 NC_006146.1 + 54794 0.68 0.942241
Target:  5'- -aGCGCGCCUuggGCAGcucguuggagagGACCCGGCGGa -3'
miRNA:   3'- acUGUGUGGA---CGUCca----------UUGGGUUGCC- -5'
28760 5' -52.7 NC_006146.1 + 57379 0.69 0.918335
Target:  5'- gGugGCGCCgGUGGGcUGGCCCcGCGa -3'
miRNA:   3'- aCugUGUGGaCGUCC-AUUGGGuUGCc -5'
28760 5' -52.7 NC_006146.1 + 58173 0.68 0.945874
Target:  5'- cGAC-CACCUGCcuguacacgggccucAGGgacGCCCugcuGCGGg -3'
miRNA:   3'- aCUGuGUGGACG---------------UCCau-UGGGu---UGCC- -5'
28760 5' -52.7 NC_006146.1 + 58908 0.72 0.797424
Target:  5'- uUGGCGCgACCUGCAGGgcgAGgCCAugaacuCGGc -3'
miRNA:   3'- -ACUGUG-UGGACGUCCa--UUgGGUu-----GCC- -5'
28760 5' -52.7 NC_006146.1 + 59029 0.67 0.973008
Target:  5'- gUGaACGCACCgcugGC-GGUGaggGCgCAGCGGg -3'
miRNA:   3'- -AC-UGUGUGGa---CGuCCAU---UGgGUUGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.