miRNA display CGI


Results 21 - 40 of 144 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28760 5' -52.7 NC_006146.1 + 53670 0.72 0.835885
Target:  5'- aGACGCuCUUGCccAGGUAgaggaugucguccgcGCCUAGCGGg -3'
miRNA:   3'- aCUGUGuGGACG--UCCAU---------------UGGGUUGCC- -5'
28760 5' -52.7 NC_006146.1 + 146061 0.71 0.84086
Target:  5'- ---aGCACCUGCuuguuGGUGACCCGgACGu -3'
miRNA:   3'- acugUGUGGACGu----CCAUUGGGU-UGCc -5'
28760 5' -52.7 NC_006146.1 + 155331 0.71 0.848996
Target:  5'- cGACGCGCCUGUccucccAGG-GACCCGagACGa -3'
miRNA:   3'- aCUGUGUGGACG------UCCaUUGGGU--UGCc -5'
28760 5' -52.7 NC_006146.1 + 43354 0.71 0.848996
Target:  5'- aGGCGCAgcCCgugGCaggGGGUGGCUUAGCGGg -3'
miRNA:   3'- aCUGUGU--GGa--CG---UCCAUUGGGUUGCC- -5'
28760 5' -52.7 NC_006146.1 + 120351 0.71 0.848996
Target:  5'- gGAa--ACCUGCAGGU-GCCCAccCGGg -3'
miRNA:   3'- aCUgugUGGACGUCCAuUGGGUu-GCC- -5'
28760 5' -52.7 NC_006146.1 + 128469 0.71 0.864657
Target:  5'- gGACcuaaaACACUUGUAGGccagggGGCCCAcgGCGGg -3'
miRNA:   3'- aCUG-----UGUGGACGUCCa-----UUGGGU--UGCC- -5'
28760 5' -52.7 NC_006146.1 + 59773 0.71 0.872169
Target:  5'- cGGC-CACCUGgGGGUugagggugucGACCCGGCa- -3'
miRNA:   3'- aCUGuGUGGACgUCCA----------UUGGGUUGcc -5'
28760 5' -52.7 NC_006146.1 + 41586 0.7 0.879461
Target:  5'- cUGGCugGCCgagGCGGaGaGGCCCGGgGGg -3'
miRNA:   3'- -ACUGugUGGa--CGUC-CaUUGGGUUgCC- -5'
28760 5' -52.7 NC_006146.1 + 76385 0.7 0.886527
Target:  5'- gGGCGCGCCgggGgAGGgaccgggGGCgCCGACGGc -3'
miRNA:   3'- aCUGUGUGGa--CgUCCa------UUG-GGUUGCC- -5'
28760 5' -52.7 NC_006146.1 + 92250 0.7 0.893363
Target:  5'- cUGugGCugCUGCuGGggggcgGGCCCGGCcuGGg -3'
miRNA:   3'- -ACugUGugGACGuCCa-----UUGGGUUG--CC- -5'
28760 5' -52.7 NC_006146.1 + 158931 0.7 0.893363
Target:  5'- cUGGCAgAaCUGCAGGUAauagGCgUAGCGGg -3'
miRNA:   3'- -ACUGUgUgGACGUCCAU----UGgGUUGCC- -5'
28760 5' -52.7 NC_006146.1 + 170101 0.7 0.899965
Target:  5'- gGGCcgGCGCC-GCAGGggGGgCCGGCGGg -3'
miRNA:   3'- aCUG--UGUGGaCGUCCa-UUgGGUUGCC- -5'
28760 5' -52.7 NC_006146.1 + 34425 0.7 0.899965
Target:  5'- uUGGguUACCUGCAGGUGugUCAccaGGu -3'
miRNA:   3'- -ACUguGUGGACGUCCAUugGGUug-CC- -5'
28760 5' -52.7 NC_006146.1 + 12787 0.7 0.90633
Target:  5'- gGACGCGgcCCUGCAGGggcgGACguacggaCGGCGGc -3'
miRNA:   3'- aCUGUGU--GGACGUCCa---UUGg------GUUGCC- -5'
28760 5' -52.7 NC_006146.1 + 15089 0.69 0.918335
Target:  5'- cUGACuCACCUGUuugacucGGUGGCCCccagggccaccgAGCGGc -3'
miRNA:   3'- -ACUGuGUGGACGu------CCAUUGGG------------UUGCC- -5'
28760 5' -52.7 NC_006146.1 + 129279 0.69 0.918335
Target:  5'- gGGCugGUCUGCGcccgGGCCCAGCGGa -3'
miRNA:   3'- aCUGugUGGACGUcca-UUGGGUUGCC- -5'
28760 5' -52.7 NC_006146.1 + 57379 0.69 0.918335
Target:  5'- gGugGCGCCgGUGGGcUGGCCCcGCGa -3'
miRNA:   3'- aCugUGUGGaCGUCC-AUUGGGuUGCc -5'
28760 5' -52.7 NC_006146.1 + 48637 0.69 0.918335
Target:  5'- gGGCGgGCUccggGCGGGU-GCCCAGCGc -3'
miRNA:   3'- aCUGUgUGGa---CGUCCAuUGGGUUGCc -5'
28760 5' -52.7 NC_006146.1 + 71165 0.69 0.923972
Target:  5'- cGGCACugUggcuugggUGguGGUAGCCgGugGGc -3'
miRNA:   3'- aCUGUGugG--------ACguCCAUUGGgUugCC- -5'
28760 5' -52.7 NC_006146.1 + 41274 0.69 0.923972
Target:  5'- aGcACGCGCCcGCGGagGACCCGGCGa -3'
miRNA:   3'- aC-UGUGUGGaCGUCcaUUGGGUUGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.