Results 41 - 60 of 81 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28761 | 5' | -49.6 | NC_006146.1 | + | 90625 | 0.68 | 0.975797 |
Target: 5'- cGCCCCGGGGa-GGUaGGGUg- -3' miRNA: 3'- uUGGGGCCCCgaCUAgUCCAau -5' |
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28761 | 5' | -49.6 | NC_006146.1 | + | 142428 | 0.68 | 0.975797 |
Target: 5'- cGACCCUGGGGuCUG-UCuGGggGa -3' miRNA: 3'- -UUGGGGCCCC-GACuAGuCCaaU- -5' |
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28761 | 5' | -49.6 | NC_006146.1 | + | 148584 | 0.68 | 0.975797 |
Target: 5'- cGACCCUGGGGuCUG-UCuGGggGa -3' miRNA: 3'- -UUGGGGCCCC-GACuAGuCCaaU- -5' |
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28761 | 5' | -49.6 | NC_006146.1 | + | 157817 | 0.68 | 0.975797 |
Target: 5'- cGACCCUGGGGuCUG-UCuGGggGa -3' miRNA: 3'- -UUGGGGCCCC-GACuAGuCCaaU- -5' |
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28761 | 5' | -49.6 | NC_006146.1 | + | 151662 | 0.68 | 0.975797 |
Target: 5'- cGACCCUGGGGuCUG-UCuGGggGa -3' miRNA: 3'- -UUGGGGCCCC-GACuAGuCCaaU- -5' |
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28761 | 5' | -49.6 | NC_006146.1 | + | 154739 | 0.68 | 0.975797 |
Target: 5'- cGACCCUGGGGuCUG-UCuGGggGa -3' miRNA: 3'- -UUGGGGCCCC-GACuAGuCCaaU- -5' |
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28761 | 5' | -49.6 | NC_006146.1 | + | 124627 | 0.68 | 0.969934 |
Target: 5'- cGCCaCCGGGGCUcaaaacGUCGGGg-- -3' miRNA: 3'- uUGG-GGCCCCGAc-----UAGUCCaau -5' |
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28761 | 5' | -49.6 | NC_006146.1 | + | 137028 | 0.68 | 0.96665 |
Target: 5'- cACCCCGGGGagGAggcCGGGUg- -3' miRNA: 3'- uUGGGGCCCCgaCUa--GUCCAau -5' |
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28761 | 5' | -49.6 | NC_006146.1 | + | 42960 | 0.68 | 0.96665 |
Target: 5'- cGCCCCGGGcacGCUGAgcgCGGaGUUu -3' miRNA: 3'- uUGGGGCCC---CGACUa--GUC-CAAu -5' |
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28761 | 5' | -49.6 | NC_006146.1 | + | 106647 | 0.69 | 0.963121 |
Target: 5'- uGCUgCGGccGGCUGGUCAGGg-- -3' miRNA: 3'- uUGGgGCC--CCGACUAGUCCaau -5' |
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28761 | 5' | -49.6 | NC_006146.1 | + | 115795 | 0.69 | 0.963121 |
Target: 5'- aGGCCCUGGaGCUGAaCAGGa-- -3' miRNA: 3'- -UUGGGGCCcCGACUaGUCCaau -5' |
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28761 | 5' | -49.6 | NC_006146.1 | + | 63645 | 0.69 | 0.95934 |
Target: 5'- gGGCaCCCGGGGgUGAUgaacUAGGUg- -3' miRNA: 3'- -UUG-GGGCCCCgACUA----GUCCAau -5' |
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28761 | 5' | -49.6 | NC_006146.1 | + | 126555 | 0.69 | 0.95934 |
Target: 5'- -cCCCCGGGGCccgcGGUCAcGGa-- -3' miRNA: 3'- uuGGGGCCCCGa---CUAGU-CCaau -5' |
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28761 | 5' | -49.6 | NC_006146.1 | + | 60865 | 0.69 | 0.956947 |
Target: 5'- uAUCCCGGGGgucacgaggccaucuUUGAUCAGGa-- -3' miRNA: 3'- uUGGGGCCCC---------------GACUAGUCCaau -5' |
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28761 | 5' | -49.6 | NC_006146.1 | + | 57560 | 0.69 | 0.955299 |
Target: 5'- cGCUaCUGGGGCUGAUCAGc--- -3' miRNA: 3'- uUGG-GGCCCCGACUAGUCcaau -5' |
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28761 | 5' | -49.6 | NC_006146.1 | + | 41272 | 0.69 | 0.946423 |
Target: 5'- gAGCCgaCCGGGGC--GUCAGGUa- -3' miRNA: 3'- -UUGG--GGCCCCGacUAGUCCAau -5' |
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28761 | 5' | -49.6 | NC_006146.1 | + | 13629 | 0.7 | 0.941578 |
Target: 5'- cACCCUGGGGCUGAcgaUCAa---- -3' miRNA: 3'- uUGGGGCCCCGACU---AGUccaau -5' |
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28761 | 5' | -49.6 | NC_006146.1 | + | 167707 | 0.7 | 0.941079 |
Target: 5'- -uCCCCGGGGCccGAgcgcgcgUCGGGUg- -3' miRNA: 3'- uuGGGGCCCCGa-CU-------AGUCCAau -5' |
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28761 | 5' | -49.6 | NC_006146.1 | + | 169572 | 0.7 | 0.941079 |
Target: 5'- -uCCCCGGGGCccGAgcgcgcgUCGGGUg- -3' miRNA: 3'- uuGGGGCCCCGa-CU-------AGUCCAau -5' |
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28761 | 5' | -49.6 | NC_006146.1 | + | 54565 | 0.7 | 0.919431 |
Target: 5'- cGCCCCaccguGGGCaUGAUCAGGg-- -3' miRNA: 3'- uUGGGGc----CCCG-ACUAGUCCaau -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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