miRNA display CGI


Results 21 - 40 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28761 5' -49.6 NC_006146.1 + 58356 0.67 0.98839
Target:  5'- cGACCCCGGGuCUGAgcuccgaguUCgAGGUg- -3'
miRNA:   3'- -UUGGGGCCCcGACU---------AG-UCCAau -5'
28761 5' -49.6 NC_006146.1 + 164055 0.67 0.986754
Target:  5'- cAAUCCCGGGGgUGAagggaggggcaUCAauGGUUAc -3'
miRNA:   3'- -UUGGGGCCCCgACU-----------AGU--CCAAU- -5'
28761 5' -49.6 NC_006146.1 + 86321 0.67 0.986754
Target:  5'- aGGCCCUGggcaGGGUcuUGAUCAGGg-- -3'
miRNA:   3'- -UUGGGGC----CCCG--ACUAGUCCaau -5'
28761 5' -49.6 NC_006146.1 + 116799 0.67 0.986754
Target:  5'- aGGCCaCGGGGggGAgCAGGUUAg -3'
miRNA:   3'- -UUGGgGCCCCgaCUaGUCCAAU- -5'
28761 5' -49.6 NC_006146.1 + 44504 0.67 0.985691
Target:  5'- cGACCCCGGgcguccgggguuucaGGCUGA-CGGGc-- -3'
miRNA:   3'- -UUGGGGCC---------------CCGACUaGUCCaau -5'
28761 5' -49.6 NC_006146.1 + 113810 0.67 0.984947
Target:  5'- -gUCgCGGGGCUGucguacagCAGGUUGg -3'
miRNA:   3'- uuGGgGCCCCGACua------GUCCAAU- -5'
28761 5' -49.6 NC_006146.1 + 97968 0.67 0.982957
Target:  5'- uGACCUCGGGGaaGAUgGGGc-- -3'
miRNA:   3'- -UUGGGGCCCCgaCUAgUCCaau -5'
28761 5' -49.6 NC_006146.1 + 56752 0.67 0.982957
Target:  5'- gGACgUCCGGGGCcUGAUCGcGGa-- -3'
miRNA:   3'- -UUG-GGGCCCCG-ACUAGU-CCaau -5'
28761 5' -49.6 NC_006146.1 + 102647 0.67 0.982957
Target:  5'- --aCCCGGGGCUGG-CAGu--- -3'
miRNA:   3'- uugGGGCCCCGACUaGUCcaau -5'
28761 5' -49.6 NC_006146.1 + 19950 0.67 0.982957
Target:  5'- -cUCCCuGGGCaGAUCAGGg-- -3'
miRNA:   3'- uuGGGGcCCCGaCUAGUCCaau -5'
28761 5' -49.6 NC_006146.1 + 48578 0.67 0.982957
Target:  5'- --aUCCGGGGCcucgggGGUCAGGg-- -3'
miRNA:   3'- uugGGGCCCCGa-----CUAGUCCaau -5'
28761 5' -49.6 NC_006146.1 + 51827 0.67 0.982748
Target:  5'- -uCCCCGGGGCggcgugGAggggggcUCGGGg-- -3'
miRNA:   3'- uuGGGGCCCCGa-----CU-------AGUCCaau -5'
28761 5' -49.6 NC_006146.1 + 12633 0.67 0.980776
Target:  5'- --aCCCGGGGCUGGgcCAGaGUc- -3'
miRNA:   3'- uugGGGCCCCGACUa-GUC-CAau -5'
28761 5' -49.6 NC_006146.1 + 41605 0.67 0.980776
Target:  5'- aGGCCCgGgGGGCUGGUCcgcuGGg-- -3'
miRNA:   3'- -UUGGGgC-CCCGACUAGu---CCaau -5'
28761 5' -49.6 NC_006146.1 + 52863 0.67 0.980776
Target:  5'- cGCCCgGGGGCUc--CAGGUc- -3'
miRNA:   3'- uUGGGgCCCCGAcuaGUCCAau -5'
28761 5' -49.6 NC_006146.1 + 57347 0.67 0.980776
Target:  5'- gGGCCCCGGGuGUcGGUgAGGg-- -3'
miRNA:   3'- -UUGGGGCCC-CGaCUAgUCCaau -5'
28761 5' -49.6 NC_006146.1 + 52699 0.67 0.980776
Target:  5'- cAGCUCCGGgcGGgaGGUCAGGg-- -3'
miRNA:   3'- -UUGGGGCC--CCgaCUAGUCCaau -5'
28761 5' -49.6 NC_006146.1 + 154196 0.68 0.978392
Target:  5'- cACCCCGGGGC--GUCGuGGa-- -3'
miRNA:   3'- uUGGGGCCCCGacUAGU-CCaau -5'
28761 5' -49.6 NC_006146.1 + 75713 0.68 0.978392
Target:  5'- cACCCCGGGGUgaggacacUGAgacguGGUUAg -3'
miRNA:   3'- uUGGGGCCCCG--------ACUagu--CCAAU- -5'
28761 5' -49.6 NC_006146.1 + 145506 0.68 0.975797
Target:  5'- cGACCCUGGGGuCUG-UCuGGggGa -3'
miRNA:   3'- -UUGGGGCCCC-GACuAGuCCaaU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.