miRNA display CGI


Results 21 - 40 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28761 5' -49.6 NC_006146.1 + 41605 0.67 0.980776
Target:  5'- aGGCCCgGgGGGCUGGUCcgcuGGg-- -3'
miRNA:   3'- -UUGGGgC-CCCGACUAGu---CCaau -5'
28761 5' -49.6 NC_006146.1 + 42960 0.68 0.96665
Target:  5'- cGCCCCGGGcacGCUGAgcgCGGaGUUu -3'
miRNA:   3'- uUGGGGCCC---CGACUa--GUC-CAAu -5'
28761 5' -49.6 NC_006146.1 + 44504 0.67 0.985691
Target:  5'- cGACCCCGGgcguccgggguuucaGGCUGA-CGGGc-- -3'
miRNA:   3'- -UUGGGGCC---------------CCGACUaGUCCaau -5'
28761 5' -49.6 NC_006146.1 + 44820 0.66 0.994091
Target:  5'- aGGCCCCGcugcGGCUGGUgacggaggugggugUAGGUUAu -3'
miRNA:   3'- -UUGGGGCc---CCGACUA--------------GUCCAAU- -5'
28761 5' -49.6 NC_006146.1 + 48578 0.67 0.982957
Target:  5'- --aUCCGGGGCcucgggGGUCAGGg-- -3'
miRNA:   3'- uugGGGCCCCGa-----CUAGUCCaau -5'
28761 5' -49.6 NC_006146.1 + 51827 0.67 0.982748
Target:  5'- -uCCCCGGGGCggcgugGAggggggcUCGGGg-- -3'
miRNA:   3'- uuGGGGCCCCGa-----CU-------AGUCCaau -5'
28761 5' -49.6 NC_006146.1 + 52699 0.67 0.980776
Target:  5'- cAGCUCCGGgcGGgaGGUCAGGg-- -3'
miRNA:   3'- -UUGGGGCC--CCgaCUAGUCCaau -5'
28761 5' -49.6 NC_006146.1 + 52863 0.67 0.980776
Target:  5'- cGCCCgGGGGCUc--CAGGUc- -3'
miRNA:   3'- uUGGGgCCCCGAcuaGUCCAau -5'
28761 5' -49.6 NC_006146.1 + 54565 0.7 0.919431
Target:  5'- cGCCCCaccguGGGCaUGAUCAGGg-- -3'
miRNA:   3'- uUGGGGc----CCCG-ACUAGUCCaau -5'
28761 5' -49.6 NC_006146.1 + 55056 0.78 0.57451
Target:  5'- cACCCCGGGGUggccaugacggUGGUCAGGa-- -3'
miRNA:   3'- uUGGGGCCCCG-----------ACUAGUCCaau -5'
28761 5' -49.6 NC_006146.1 + 56752 0.67 0.982957
Target:  5'- gGACgUCCGGGGCcUGAUCGcGGa-- -3'
miRNA:   3'- -UUG-GGGCCCCG-ACUAGU-CCaau -5'
28761 5' -49.6 NC_006146.1 + 57347 0.67 0.980776
Target:  5'- gGGCCCCGGGuGUcGGUgAGGg-- -3'
miRNA:   3'- -UUGGGGCCC-CGaCUAgUCCaau -5'
28761 5' -49.6 NC_006146.1 + 57560 0.69 0.955299
Target:  5'- cGCUaCUGGGGCUGAUCAGc--- -3'
miRNA:   3'- uUGG-GGCCCCGACUAGUCcaau -5'
28761 5' -49.6 NC_006146.1 + 58356 0.67 0.98839
Target:  5'- cGACCCCGGGuCUGAgcuccgaguUCgAGGUg- -3'
miRNA:   3'- -UUGGGGCCCcGACU---------AG-UCCAau -5'
28761 5' -49.6 NC_006146.1 + 60865 0.69 0.956947
Target:  5'- uAUCCCGGGGgucacgaggccaucuUUGAUCAGGa-- -3'
miRNA:   3'- uUGGGGCCCC---------------GACUAGUCCaau -5'
28761 5' -49.6 NC_006146.1 + 60960 0.66 0.991188
Target:  5'- aGGCCCgGGGGUggggGGUCAccuuGGUg- -3'
miRNA:   3'- -UUGGGgCCCCGa---CUAGU----CCAau -5'
28761 5' -49.6 NC_006146.1 + 63002 0.66 0.994359
Target:  5'- gGGCUCCGGGaGuCUGG-CGGGUg- -3'
miRNA:   3'- -UUGGGGCCC-C-GACUaGUCCAau -5'
28761 5' -49.6 NC_006146.1 + 63645 0.69 0.95934
Target:  5'- gGGCaCCCGGGGgUGAUgaacUAGGUg- -3'
miRNA:   3'- -UUG-GGGCCCCgACUA----GUCCAau -5'
28761 5' -49.6 NC_006146.1 + 75713 0.68 0.978392
Target:  5'- cACCCCGGGGUgaggacacUGAgacguGGUUAg -3'
miRNA:   3'- uUGGGGCCCCG--------ACUagu--CCAAU- -5'
28761 5' -49.6 NC_006146.1 + 76919 0.71 0.885541
Target:  5'- uGACCgCGGGGCUGcagcCGGGUg- -3'
miRNA:   3'- -UUGGgGCCCCGACua--GUCCAau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.