miRNA display CGI


Results 1 - 20 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28761 5' -49.6 NC_006146.1 + 1167 0.67 0.98839
Target:  5'- cGCCCCGGGGCUcccccgcgccGAUCuGa--- -3'
miRNA:   3'- uUGGGGCCCCGA----------CUAGuCcaau -5'
28761 5' -49.6 NC_006146.1 + 2099 0.67 0.98839
Target:  5'- cGCCCCGGGGCUcccccgcgccGAUCuGa--- -3'
miRNA:   3'- uUGGGGCCCCGA----------CUAGuCcaau -5'
28761 5' -49.6 NC_006146.1 + 3031 0.67 0.98839
Target:  5'- cGCCCCGGGGCUcccccgcgccGAUCuGa--- -3'
miRNA:   3'- uUGGGGCCCCGA----------CUAGuCcaau -5'
28761 5' -49.6 NC_006146.1 + 4374 0.66 0.993425
Target:  5'- cGGCCCCGcGGGCUcccCAGGc-- -3'
miRNA:   3'- -UUGGGGC-CCCGAcuaGUCCaau -5'
28761 5' -49.6 NC_006146.1 + 5238 0.74 0.779479
Target:  5'- cGGCCUCGGGGCUG-UgGGGUc- -3'
miRNA:   3'- -UUGGGGCCCCGACuAgUCCAau -5'
28761 5' -49.6 NC_006146.1 + 8429 0.66 0.994359
Target:  5'- gGACCCUGGGGaccagGAgagcUCGGGg-- -3'
miRNA:   3'- -UUGGGGCCCCga---CU----AGUCCaau -5'
28761 5' -49.6 NC_006146.1 + 12633 0.67 0.980776
Target:  5'- --aCCCGGGGCUGGgcCAGaGUc- -3'
miRNA:   3'- uugGGGCCCCGACUa-GUC-CAau -5'
28761 5' -49.6 NC_006146.1 + 13629 0.7 0.941578
Target:  5'- cACCCUGGGGCUGAcgaUCAa---- -3'
miRNA:   3'- uUGGGGCCCCGACU---AGUccaau -5'
28761 5' -49.6 NC_006146.1 + 16720 0.66 0.993425
Target:  5'- cGCCCCGGGGUgGAUacuguGGa-- -3'
miRNA:   3'- uUGGGGCCCCGaCUAgu---CCaau -5'
28761 5' -49.6 NC_006146.1 + 18260 0.74 0.769394
Target:  5'- cAGCCUgGGGaGCgugGGUCAGGUUAu -3'
miRNA:   3'- -UUGGGgCCC-CGa--CUAGUCCAAU- -5'
28761 5' -49.6 NC_006146.1 + 18849 0.72 0.870127
Target:  5'- aGACCCCGGGcGCUGc-CGGGg-- -3'
miRNA:   3'- -UUGGGGCCC-CGACuaGUCCaau -5'
28761 5' -49.6 NC_006146.1 + 19950 0.67 0.982957
Target:  5'- -cUCCCuGGGCaGAUCAGGg-- -3'
miRNA:   3'- uuGGGGcCCCGaCUAGUCCaau -5'
28761 5' -49.6 NC_006146.1 + 22404 0.72 0.877962
Target:  5'- uGGCCCCGGGGUccaccguggUGAccCAGGUg- -3'
miRNA:   3'- -UUGGGGCCCCG---------ACUa-GUCCAau -5'
28761 5' -49.6 NC_006146.1 + 29593 0.66 0.992372
Target:  5'- gGACCCCgGGGGCUcagcCAGGc-- -3'
miRNA:   3'- -UUGGGG-CCCCGAcua-GUCCaau -5'
28761 5' -49.6 NC_006146.1 + 32136 0.72 0.853719
Target:  5'- cACCCCGGGGUgcuggGGUgGGGg-- -3'
miRNA:   3'- uUGGGGCCCCGa----CUAgUCCaau -5'
28761 5' -49.6 NC_006146.1 + 33221 0.66 0.993425
Target:  5'- uGCUCCGGGGCagc-CGGGUg- -3'
miRNA:   3'- uUGGGGCCCCGacuaGUCCAau -5'
28761 5' -49.6 NC_006146.1 + 33343 0.66 0.993425
Target:  5'- uGCUCCGGGGCagc-CGGGUg- -3'
miRNA:   3'- uUGGGGCCCCGacuaGUCCAau -5'
28761 5' -49.6 NC_006146.1 + 35324 0.71 0.9132
Target:  5'- uAACUCCGGGcCUGAagAGGUUGa -3'
miRNA:   3'- -UUGGGGCCCcGACUagUCCAAU- -5'
28761 5' -49.6 NC_006146.1 + 41066 0.66 0.989864
Target:  5'- gGGCCUCGGGGUggaggGAggcCAGGg-- -3'
miRNA:   3'- -UUGGGGCCCCGa----CUa--GUCCaau -5'
28761 5' -49.6 NC_006146.1 + 41272 0.69 0.946423
Target:  5'- gAGCCgaCCGGGGC--GUCAGGUa- -3'
miRNA:   3'- -UUGG--GGCCCCGacUAGUCCAau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.