miRNA display CGI


Results 1 - 20 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28761 5' -49.6 NC_006146.1 + 52699 0.67 0.980776
Target:  5'- cAGCUCCGGgcGGgaGGUCAGGg-- -3'
miRNA:   3'- -UUGGGGCC--CCgaCUAGUCCaau -5'
28761 5' -49.6 NC_006146.1 + 167707 0.7 0.941079
Target:  5'- -uCCCCGGGGCccGAgcgcgcgUCGGGUg- -3'
miRNA:   3'- uuGGGGCCCCGa-CU-------AGUCCAau -5'
28761 5' -49.6 NC_006146.1 + 169572 0.7 0.941079
Target:  5'- -uCCCCGGGGCccGAgcgcgcgUCGGGUg- -3'
miRNA:   3'- uuGGGGCCCCGa-CU-------AGUCCAau -5'
28761 5' -49.6 NC_006146.1 + 63645 0.69 0.95934
Target:  5'- gGGCaCCCGGGGgUGAUgaacUAGGUg- -3'
miRNA:   3'- -UUG-GGGCCCCgACUA----GUCCAau -5'
28761 5' -49.6 NC_006146.1 + 126555 0.69 0.95934
Target:  5'- -cCCCCGGGGCccgcGGUCAcGGa-- -3'
miRNA:   3'- uuGGGGCCCCGa---CUAGU-CCaau -5'
28761 5' -49.6 NC_006146.1 + 115795 0.69 0.963121
Target:  5'- aGGCCCUGGaGCUGAaCAGGa-- -3'
miRNA:   3'- -UUGGGGCCcCGACUaGUCCaau -5'
28761 5' -49.6 NC_006146.1 + 75713 0.68 0.978392
Target:  5'- cACCCCGGGGUgaggacacUGAgacguGGUUAg -3'
miRNA:   3'- uUGGGGCCCCG--------ACUagu--CCAAU- -5'
28761 5' -49.6 NC_006146.1 + 154196 0.68 0.978392
Target:  5'- cACCCCGGGGC--GUCGuGGa-- -3'
miRNA:   3'- uUGGGGCCCCGacUAGU-CCaau -5'
28761 5' -49.6 NC_006146.1 + 41605 0.67 0.980776
Target:  5'- aGGCCCgGgGGGCUGGUCcgcuGGg-- -3'
miRNA:   3'- -UUGGGgC-CCCGACUAGu---CCaau -5'
28761 5' -49.6 NC_006146.1 + 35324 0.71 0.9132
Target:  5'- uAACUCCGGGcCUGAagAGGUUGa -3'
miRNA:   3'- -UUGGGGCCCcGACUagUCCAAU- -5'
28761 5' -49.6 NC_006146.1 + 148510 0.71 0.906692
Target:  5'- gGACCCCGGGGCca---GGGUg- -3'
miRNA:   3'- -UUGGGGCCCCGacuagUCCAau -5'
28761 5' -49.6 NC_006146.1 + 169747 0.73 0.808767
Target:  5'- gAGCCCCGGGGCgGccCGGGg-- -3'
miRNA:   3'- -UUGGGGCCCCGaCuaGUCCaau -5'
28761 5' -49.6 NC_006146.1 + 167435 0.74 0.759166
Target:  5'- -gUCCCGGGGCggggGGUCGGGc-- -3'
miRNA:   3'- uuGGGGCCCCGa---CUAGUCCaau -5'
28761 5' -49.6 NC_006146.1 + 168367 0.74 0.759166
Target:  5'- -gUCCCGGGGCggggGGUCGGGc-- -3'
miRNA:   3'- uuGGGGCCCCGa---CUAGUCCaau -5'
28761 5' -49.6 NC_006146.1 + 169299 0.74 0.759166
Target:  5'- -gUCCCGGGGCggggGGUCGGGc-- -3'
miRNA:   3'- uuGGGGCCCCGa---CUAGUCCaau -5'
28761 5' -49.6 NC_006146.1 + 170230 0.74 0.759166
Target:  5'- -gUCCCGGGGCggggGGUCGGGc-- -3'
miRNA:   3'- uuGGGGCCCCGa---CUAGUCCaau -5'
28761 5' -49.6 NC_006146.1 + 5238 0.74 0.779479
Target:  5'- cGGCCUCGGGGCUG-UgGGGUc- -3'
miRNA:   3'- -UUGGGGCCCCGACuAgUCCAau -5'
28761 5' -49.6 NC_006146.1 + 127954 0.73 0.799176
Target:  5'- cGugCCCGGGGCgGAgggCAGGg-- -3'
miRNA:   3'- -UugGGGCCCCGaCUa--GUCCaau -5'
28761 5' -49.6 NC_006146.1 + 167883 0.73 0.808767
Target:  5'- gAGCCCCGGGGCgGccCGGGg-- -3'
miRNA:   3'- -UUGGGGCCCCGaCuaGUCCaau -5'
28761 5' -49.6 NC_006146.1 + 168815 0.73 0.808767
Target:  5'- gAGCCCCGGGGCgGccCGGGg-- -3'
miRNA:   3'- -UUGGGGCCCCGaCuaGUCCaau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.