miRNA display CGI


Results 1 - 20 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28761 5' -49.6 NC_006146.1 + 135617 1.04 0.01709
Target:  5'- cAACCCCGGGGCUGAUCAGGUUAa -3'
miRNA:   3'- -UUGGGGCCCCGACUAGUCCAAU- -5'
28761 5' -49.6 NC_006146.1 + 124627 0.68 0.969934
Target:  5'- cGCCaCCGGGGCUcaaaacGUCGGGg-- -3'
miRNA:   3'- uUGG-GGCCCCGAc-----UAGUCCaau -5'
28761 5' -49.6 NC_006146.1 + 142428 0.68 0.975797
Target:  5'- cGACCCUGGGGuCUG-UCuGGggGa -3'
miRNA:   3'- -UUGGGGCCCC-GACuAGuCCaaU- -5'
28761 5' -49.6 NC_006146.1 + 8429 0.66 0.994359
Target:  5'- gGACCCUGGGGaccagGAgagcUCGGGg-- -3'
miRNA:   3'- -UUGGGGCCCCga---CU----AGUCCaau -5'
28761 5' -49.6 NC_006146.1 + 126641 0.72 0.853719
Target:  5'- cACCCCGGGGCccg-CAGGg-- -3'
miRNA:   3'- uUGGGGCCCCGacuaGUCCaau -5'
28761 5' -49.6 NC_006146.1 + 135966 0.72 0.853719
Target:  5'- cACCCCGGGGUgcuggGGUgGGGg-- -3'
miRNA:   3'- uUGGGGCCCCGa----CUAgUCCaau -5'
28761 5' -49.6 NC_006146.1 + 22404 0.72 0.877962
Target:  5'- uGGCCCCGGGGUccaccguggUGAccCAGGUg- -3'
miRNA:   3'- -UUGGGGCCCCG---------ACUa-GUCCAau -5'
28761 5' -49.6 NC_006146.1 + 76919 0.71 0.885541
Target:  5'- uGACCgCGGGGCUGcagcCGGGUg- -3'
miRNA:   3'- -UUGGgGCCCCGACua--GUCCAau -5'
28761 5' -49.6 NC_006146.1 + 41272 0.69 0.946423
Target:  5'- gAGCCgaCCGGGGC--GUCAGGUa- -3'
miRNA:   3'- -UUGG--GGCCCCGacUAGUCCAau -5'
28761 5' -49.6 NC_006146.1 + 42960 0.68 0.96665
Target:  5'- cGCCCCGGGcacGCUGAgcgCGGaGUUu -3'
miRNA:   3'- uUGGGGCCC---CGACUa--GUC-CAAu -5'
28761 5' -49.6 NC_006146.1 + 60865 0.69 0.956947
Target:  5'- uAUCCCGGGGgucacgaggccaucuUUGAUCAGGa-- -3'
miRNA:   3'- uUGGGGCCCC---------------GACUAGUCCaau -5'
28761 5' -49.6 NC_006146.1 + 13629 0.7 0.941578
Target:  5'- cACCCUGGGGCUGAcgaUCAa---- -3'
miRNA:   3'- uUGGGGCCCCGACU---AGUccaau -5'
28761 5' -49.6 NC_006146.1 + 55056 0.78 0.57451
Target:  5'- cACCCCGGGGUggccaugacggUGGUCAGGa-- -3'
miRNA:   3'- uUGGGGCCCCG-----------ACUAGUCCaau -5'
28761 5' -49.6 NC_006146.1 + 106647 0.69 0.963121
Target:  5'- uGCUgCGGccGGCUGGUCAGGg-- -3'
miRNA:   3'- uUGGgGCC--CCGACUAGUCCaau -5'
28761 5' -49.6 NC_006146.1 + 18260 0.74 0.769394
Target:  5'- cAGCCUgGGGaGCgugGGUCAGGUUAu -3'
miRNA:   3'- -UUGGGgCCC-CGa--CUAGUCCAAU- -5'
28761 5' -49.6 NC_006146.1 + 54565 0.7 0.919431
Target:  5'- cGCCCCaccguGGGCaUGAUCAGGg-- -3'
miRNA:   3'- uUGGGGc----CCCG-ACUAGUCCaau -5'
28761 5' -49.6 NC_006146.1 + 137028 0.68 0.96665
Target:  5'- cACCCCGGGGagGAggcCGGGUg- -3'
miRNA:   3'- uUGGGGCCCCgaCUa--GUCCAau -5'
28761 5' -49.6 NC_006146.1 + 90625 0.68 0.975797
Target:  5'- cGCCCCGGGGa-GGUaGGGUg- -3'
miRNA:   3'- uUGGGGCCCCgaCUAgUCCAau -5'
28761 5' -49.6 NC_006146.1 + 32136 0.72 0.853719
Target:  5'- cACCCCGGGGUgcuggGGUgGGGg-- -3'
miRNA:   3'- uUGGGGCCCCGa----CUAgUCCaau -5'
28761 5' -49.6 NC_006146.1 + 18849 0.72 0.870127
Target:  5'- aGACCCCGGGcGCUGc-CGGGg-- -3'
miRNA:   3'- -UUGGGGCCC-CGACuaGUCCaau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.