Results 1 - 20 of 81 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28761 | 5' | -49.6 | NC_006146.1 | + | 135617 | 1.04 | 0.01709 |
Target: 5'- cAACCCCGGGGCUGAUCAGGUUAa -3' miRNA: 3'- -UUGGGGCCCCGACUAGUCCAAU- -5' |
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28761 | 5' | -49.6 | NC_006146.1 | + | 55056 | 0.78 | 0.57451 |
Target: 5'- cACCCCGGGGUggccaugacggUGGUCAGGa-- -3' miRNA: 3'- uUGGGGCCCCG-----------ACUAGUCCaau -5' |
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28761 | 5' | -49.6 | NC_006146.1 | + | 99555 | 0.78 | 0.58545 |
Target: 5'- -cCCCCGGGGCagaGAUCGGGg-- -3' miRNA: 3'- uuGGGGCCCCGa--CUAGUCCaau -5' |
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28761 | 5' | -49.6 | NC_006146.1 | + | 169299 | 0.74 | 0.759166 |
Target: 5'- -gUCCCGGGGCggggGGUCGGGc-- -3' miRNA: 3'- uuGGGGCCCCGa---CUAGUCCaau -5' |
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28761 | 5' | -49.6 | NC_006146.1 | + | 167435 | 0.74 | 0.759166 |
Target: 5'- -gUCCCGGGGCggggGGUCGGGc-- -3' miRNA: 3'- uuGGGGCCCCGa---CUAGUCCaau -5' |
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28761 | 5' | -49.6 | NC_006146.1 | + | 168367 | 0.74 | 0.759166 |
Target: 5'- -gUCCCGGGGCggggGGUCGGGc-- -3' miRNA: 3'- uuGGGGCCCCGa---CUAGUCCaau -5' |
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28761 | 5' | -49.6 | NC_006146.1 | + | 170230 | 0.74 | 0.759166 |
Target: 5'- -gUCCCGGGGCggggGGUCGGGc-- -3' miRNA: 3'- uuGGGGCCCCGa---CUAGUCCaau -5' |
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28761 | 5' | -49.6 | NC_006146.1 | + | 18260 | 0.74 | 0.769394 |
Target: 5'- cAGCCUgGGGaGCgugGGUCAGGUUAu -3' miRNA: 3'- -UUGGGgCCC-CGa--CUAGUCCAAU- -5' |
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28761 | 5' | -49.6 | NC_006146.1 | + | 5238 | 0.74 | 0.779479 |
Target: 5'- cGGCCUCGGGGCUG-UgGGGUc- -3' miRNA: 3'- -UUGGGGCCCCGACuAgUCCAau -5' |
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28761 | 5' | -49.6 | NC_006146.1 | + | 127954 | 0.73 | 0.799176 |
Target: 5'- cGugCCCGGGGCgGAgggCAGGg-- -3' miRNA: 3'- -UugGGGCCCCGaCUa--GUCCaau -5' |
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28761 | 5' | -49.6 | NC_006146.1 | + | 169747 | 0.73 | 0.808767 |
Target: 5'- gAGCCCCGGGGCgGccCGGGg-- -3' miRNA: 3'- -UUGGGGCCCCGaCuaGUCCaau -5' |
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28761 | 5' | -49.6 | NC_006146.1 | + | 168815 | 0.73 | 0.808767 |
Target: 5'- gAGCCCCGGGGCgGccCGGGg-- -3' miRNA: 3'- -UUGGGGCCCCGaCuaGUCCaau -5' |
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28761 | 5' | -49.6 | NC_006146.1 | + | 167883 | 0.73 | 0.808767 |
Target: 5'- gAGCCCCGGGGCgGccCGGGg-- -3' miRNA: 3'- -UUGGGGCCCCGaCuaGUCCaau -5' |
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28761 | 5' | -49.6 | NC_006146.1 | + | 32136 | 0.72 | 0.853719 |
Target: 5'- cACCCCGGGGUgcuggGGUgGGGg-- -3' miRNA: 3'- uUGGGGCCCCGa----CUAgUCCaau -5' |
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28761 | 5' | -49.6 | NC_006146.1 | + | 135966 | 0.72 | 0.853719 |
Target: 5'- cACCCCGGGGUgcuggGGUgGGGg-- -3' miRNA: 3'- uUGGGGCCCCGa----CUAgUCCaau -5' |
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28761 | 5' | -49.6 | NC_006146.1 | + | 126641 | 0.72 | 0.853719 |
Target: 5'- cACCCCGGGGCccg-CAGGg-- -3' miRNA: 3'- uUGGGGCCCCGacuaGUCCaau -5' |
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28761 | 5' | -49.6 | NC_006146.1 | + | 18849 | 0.72 | 0.870127 |
Target: 5'- aGACCCCGGGcGCUGc-CGGGg-- -3' miRNA: 3'- -UUGGGGCCC-CGACuaGUCCaau -5' |
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28761 | 5' | -49.6 | NC_006146.1 | + | 22404 | 0.72 | 0.877962 |
Target: 5'- uGGCCCCGGGGUccaccguggUGAccCAGGUg- -3' miRNA: 3'- -UUGGGGCCCCG---------ACUa-GUCCAau -5' |
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28761 | 5' | -49.6 | NC_006146.1 | + | 76919 | 0.71 | 0.885541 |
Target: 5'- uGACCgCGGGGCUGcagcCGGGUg- -3' miRNA: 3'- -UUGGgGCCCCGACua--GUCCAau -5' |
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28761 | 5' | -49.6 | NC_006146.1 | + | 148510 | 0.71 | 0.906692 |
Target: 5'- gGACCCCGGGGCca---GGGUg- -3' miRNA: 3'- -UUGGGGCCCCGacuagUCCAau -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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