miRNA display CGI


Results 21 - 40 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28761 5' -49.6 NC_006146.1 + 35324 0.71 0.9132
Target:  5'- uAACUCCGGGcCUGAagAGGUUGa -3'
miRNA:   3'- -UUGGGGCCCcGACUagUCCAAU- -5'
28761 5' -49.6 NC_006146.1 + 54565 0.7 0.919431
Target:  5'- cGCCCCaccguGGGCaUGAUCAGGg-- -3'
miRNA:   3'- uUGGGGc----CCCG-ACUAGUCCaau -5'
28761 5' -49.6 NC_006146.1 + 167707 0.7 0.941079
Target:  5'- -uCCCCGGGGCccGAgcgcgcgUCGGGUg- -3'
miRNA:   3'- uuGGGGCCCCGa-CU-------AGUCCAau -5'
28761 5' -49.6 NC_006146.1 + 169572 0.7 0.941079
Target:  5'- -uCCCCGGGGCccGAgcgcgcgUCGGGUg- -3'
miRNA:   3'- uuGGGGCCCCGa-CU-------AGUCCAau -5'
28761 5' -49.6 NC_006146.1 + 13629 0.7 0.941578
Target:  5'- cACCCUGGGGCUGAcgaUCAa---- -3'
miRNA:   3'- uUGGGGCCCCGACU---AGUccaau -5'
28761 5' -49.6 NC_006146.1 + 41272 0.69 0.946423
Target:  5'- gAGCCgaCCGGGGC--GUCAGGUa- -3'
miRNA:   3'- -UUGG--GGCCCCGacUAGUCCAau -5'
28761 5' -49.6 NC_006146.1 + 57560 0.69 0.955299
Target:  5'- cGCUaCUGGGGCUGAUCAGc--- -3'
miRNA:   3'- uUGG-GGCCCCGACUAGUCcaau -5'
28761 5' -49.6 NC_006146.1 + 60865 0.69 0.956947
Target:  5'- uAUCCCGGGGgucacgaggccaucuUUGAUCAGGa-- -3'
miRNA:   3'- uUGGGGCCCC---------------GACUAGUCCaau -5'
28761 5' -49.6 NC_006146.1 + 126555 0.69 0.95934
Target:  5'- -cCCCCGGGGCccgcGGUCAcGGa-- -3'
miRNA:   3'- uuGGGGCCCCGa---CUAGU-CCaau -5'
28761 5' -49.6 NC_006146.1 + 63645 0.69 0.95934
Target:  5'- gGGCaCCCGGGGgUGAUgaacUAGGUg- -3'
miRNA:   3'- -UUG-GGGCCCCgACUA----GUCCAau -5'
28761 5' -49.6 NC_006146.1 + 106647 0.69 0.963121
Target:  5'- uGCUgCGGccGGCUGGUCAGGg-- -3'
miRNA:   3'- uUGGgGCC--CCGACUAGUCCaau -5'
28761 5' -49.6 NC_006146.1 + 115795 0.69 0.963121
Target:  5'- aGGCCCUGGaGCUGAaCAGGa-- -3'
miRNA:   3'- -UUGGGGCCcCGACUaGUCCaau -5'
28761 5' -49.6 NC_006146.1 + 137028 0.68 0.96665
Target:  5'- cACCCCGGGGagGAggcCGGGUg- -3'
miRNA:   3'- uUGGGGCCCCgaCUa--GUCCAau -5'
28761 5' -49.6 NC_006146.1 + 42960 0.68 0.96665
Target:  5'- cGCCCCGGGcacGCUGAgcgCGGaGUUu -3'
miRNA:   3'- uUGGGGCCC---CGACUa--GUC-CAAu -5'
28761 5' -49.6 NC_006146.1 + 124627 0.68 0.969934
Target:  5'- cGCCaCCGGGGCUcaaaacGUCGGGg-- -3'
miRNA:   3'- uUGG-GGCCCCGAc-----UAGUCCaau -5'
28761 5' -49.6 NC_006146.1 + 145506 0.68 0.975797
Target:  5'- cGACCCUGGGGuCUG-UCuGGggGa -3'
miRNA:   3'- -UUGGGGCCCC-GACuAGuCCaaU- -5'
28761 5' -49.6 NC_006146.1 + 90625 0.68 0.975797
Target:  5'- cGCCCCGGGGa-GGUaGGGUg- -3'
miRNA:   3'- uUGGGGCCCCgaCUAgUCCAau -5'
28761 5' -49.6 NC_006146.1 + 148584 0.68 0.975797
Target:  5'- cGACCCUGGGGuCUG-UCuGGggGa -3'
miRNA:   3'- -UUGGGGCCCC-GACuAGuCCaaU- -5'
28761 5' -49.6 NC_006146.1 + 151662 0.68 0.975797
Target:  5'- cGACCCUGGGGuCUG-UCuGGggGa -3'
miRNA:   3'- -UUGGGGCCCC-GACuAGuCCaaU- -5'
28761 5' -49.6 NC_006146.1 + 142428 0.68 0.975797
Target:  5'- cGACCCUGGGGuCUG-UCuGGggGa -3'
miRNA:   3'- -UUGGGGCCCC-GACuAGuCCaaU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.