miRNA display CGI


Results 1 - 20 of 81 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28761 5' -49.6 NC_006146.1 + 170230 0.74 0.759166
Target:  5'- -gUCCCGGGGCggggGGUCGGGc-- -3'
miRNA:   3'- uuGGGGCCCCGa---CUAGUCCaau -5'
28761 5' -49.6 NC_006146.1 + 169747 0.73 0.808767
Target:  5'- gAGCCCCGGGGCgGccCGGGg-- -3'
miRNA:   3'- -UUGGGGCCCCGaCuaGUCCaau -5'
28761 5' -49.6 NC_006146.1 + 169572 0.7 0.941079
Target:  5'- -uCCCCGGGGCccGAgcgcgcgUCGGGUg- -3'
miRNA:   3'- uuGGGGCCCCGa-CU-------AGUCCAau -5'
28761 5' -49.6 NC_006146.1 + 169299 0.74 0.759166
Target:  5'- -gUCCCGGGGCggggGGUCGGGc-- -3'
miRNA:   3'- uuGGGGCCCCGa---CUAGUCCaau -5'
28761 5' -49.6 NC_006146.1 + 168815 0.73 0.808767
Target:  5'- gAGCCCCGGGGCgGccCGGGg-- -3'
miRNA:   3'- -UUGGGGCCCCGaCuaGUCCaau -5'
28761 5' -49.6 NC_006146.1 + 168367 0.74 0.759166
Target:  5'- -gUCCCGGGGCggggGGUCGGGc-- -3'
miRNA:   3'- uuGGGGCCCCGa---CUAGUCCaau -5'
28761 5' -49.6 NC_006146.1 + 167883 0.73 0.808767
Target:  5'- gAGCCCCGGGGCgGccCGGGg-- -3'
miRNA:   3'- -UUGGGGCCCCGaCuaGUCCaau -5'
28761 5' -49.6 NC_006146.1 + 167707 0.7 0.941079
Target:  5'- -uCCCCGGGGCccGAgcgcgcgUCGGGUg- -3'
miRNA:   3'- uuGGGGCCCCGa-CU-------AGUCCAau -5'
28761 5' -49.6 NC_006146.1 + 167435 0.74 0.759166
Target:  5'- -gUCCCGGGGCggggGGUCGGGc-- -3'
miRNA:   3'- uuGGGGCCCCGa---CUAGUCCaau -5'
28761 5' -49.6 NC_006146.1 + 164055 0.67 0.986754
Target:  5'- cAAUCCCGGGGgUGAagggaggggcaUCAauGGUUAc -3'
miRNA:   3'- -UUGGGGCCCCgACU-----------AGU--CCAAU- -5'
28761 5' -49.6 NC_006146.1 + 162038 0.66 0.994359
Target:  5'- gAGCCUgGGGGCggGggCAGGc-- -3'
miRNA:   3'- -UUGGGgCCCCGa-CuaGUCCaau -5'
28761 5' -49.6 NC_006146.1 + 157817 0.68 0.975797
Target:  5'- cGACCCUGGGGuCUG-UCuGGggGa -3'
miRNA:   3'- -UUGGGGCCCC-GACuAGuCCaaU- -5'
28761 5' -49.6 NC_006146.1 + 154739 0.68 0.975797
Target:  5'- cGACCCUGGGGuCUG-UCuGGggGa -3'
miRNA:   3'- -UUGGGGCCCC-GACuAGuCCaaU- -5'
28761 5' -49.6 NC_006146.1 + 154196 0.68 0.978392
Target:  5'- cACCCCGGGGC--GUCGuGGa-- -3'
miRNA:   3'- uUGGGGCCCCGacUAGU-CCaau -5'
28761 5' -49.6 NC_006146.1 + 151662 0.68 0.975797
Target:  5'- cGACCCUGGGGuCUG-UCuGGggGa -3'
miRNA:   3'- -UUGGGGCCCC-GACuAGuCCaaU- -5'
28761 5' -49.6 NC_006146.1 + 149939 0.66 0.989864
Target:  5'- uGCCCuCGGGGUUGA--GGGg-- -3'
miRNA:   3'- uUGGG-GCCCCGACUagUCCaau -5'
28761 5' -49.6 NC_006146.1 + 148584 0.68 0.975797
Target:  5'- cGACCCUGGGGuCUG-UCuGGggGa -3'
miRNA:   3'- -UUGGGGCCCC-GACuAGuCCaaU- -5'
28761 5' -49.6 NC_006146.1 + 148510 0.71 0.906692
Target:  5'- gGACCCCGGGGCca---GGGUg- -3'
miRNA:   3'- -UUGGGGCCCCGacuagUCCAau -5'
28761 5' -49.6 NC_006146.1 + 145506 0.68 0.975797
Target:  5'- cGACCCUGGGGuCUG-UCuGGggGa -3'
miRNA:   3'- -UUGGGGCCCC-GACuAGuCCaaU- -5'
28761 5' -49.6 NC_006146.1 + 142428 0.68 0.975797
Target:  5'- cGACCCUGGGGuCUG-UCuGGggGa -3'
miRNA:   3'- -UUGGGGCCCC-GACuAGuCCaaU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.