miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28762 3' -43.6 NC_006146.1 + 134231 1.04 0.067331
Target:  5'- uUGGAAAUUCCCCCGCAAAAGAUAa -3'
miRNA:   3'- -ACCUUUAAGGGGGCGUUUUCUAU- -5'
28762 3' -43.6 NC_006146.1 + 63631 0.75 0.974131
Target:  5'- cUGGAGAUUUUCCCGCugugccuGAAGGUGa -3'
miRNA:   3'- -ACCUUUAAGGGGGCGu------UUUCUAU- -5'
28762 3' -43.6 NC_006146.1 + 91255 0.69 0.999804
Target:  5'- ----uAUUCCCCCGCAcuAAAGAa- -3'
miRNA:   3'- accuuUAAGGGGGCGU--UUUCUau -5'
28762 3' -43.6 NC_006146.1 + 38504 0.69 0.999851
Target:  5'- cUGGcccaccaUCCCCCGCAAAAGu-- -3'
miRNA:   3'- -ACCuuua---AGGGGGCGUUUUCuau -5'
28762 3' -43.6 NC_006146.1 + 134908 0.69 0.999887
Target:  5'- aUGGAcacguagaaccaGAgugUCCCCCGCAgagaggcugGAGGGUGa -3'
miRNA:   3'- -ACCU------------UUa--AGGGGGCGU---------UUUCUAU- -5'
28762 3' -43.6 NC_006146.1 + 130497 0.69 0.999911
Target:  5'- gUGGcuacuuugCCCCCGCGGGAGGc- -3'
miRNA:   3'- -ACCuuuaa---GGGGGCGUUUUCUau -5'
28762 3' -43.6 NC_006146.1 + 166670 0.69 0.999916
Target:  5'- cGGAGAaUUCCCCGCGugccGAGGc- -3'
miRNA:   3'- aCCUUUaAGGGGGCGUu---UUCUau -5'
28762 3' -43.6 NC_006146.1 + 53084 0.68 0.999954
Target:  5'- gUGGAGAg---CCUGCAGAAGAUGu -3'
miRNA:   3'- -ACCUUUaaggGGGCGUUUUCUAU- -5'
28762 3' -43.6 NC_006146.1 + 157325 0.68 0.999976
Target:  5'- cUGGGAGgcCCCuguCCGCGAGGGAg- -3'
miRNA:   3'- -ACCUUUaaGGG---GGCGUUUUCUau -5'
28762 3' -43.6 NC_006146.1 + 141935 0.68 0.999976
Target:  5'- cUGGGAGgcCCCuguCCGCGAGGGAg- -3'
miRNA:   3'- -ACCUUUaaGGG---GGCGUUUUCUau -5'
28762 3' -43.6 NC_006146.1 + 145013 0.68 0.999976
Target:  5'- cUGGGAGgcCCCuguCCGCGAGGGAg- -3'
miRNA:   3'- -ACCUUUaaGGG---GGCGUUUUCUau -5'
28762 3' -43.6 NC_006146.1 + 148091 0.68 0.999976
Target:  5'- cUGGGAGgcCCCuguCCGCGAGGGAg- -3'
miRNA:   3'- -ACCUUUaaGGG---GGCGUUUUCUau -5'
28762 3' -43.6 NC_006146.1 + 154247 0.68 0.999976
Target:  5'- cUGGGAGgcCCCuguCCGCGAGGGAg- -3'
miRNA:   3'- -ACCUUUaaGGG---GGCGUUUUCUau -5'
28762 3' -43.6 NC_006146.1 + 151169 0.68 0.999976
Target:  5'- cUGGGAGgcCCCuguCCGCGAGGGAg- -3'
miRNA:   3'- -ACCUUUaaGGG---GGCGUUUUCUau -5'
28762 3' -43.6 NC_006146.1 + 1141 0.67 0.999983
Target:  5'- cGGug---CCCCCGCGAGGGu-- -3'
miRNA:   3'- aCCuuuaaGGGGGCGUUUUCuau -5'
28762 3' -43.6 NC_006146.1 + 99542 0.67 0.999983
Target:  5'- cUGGAAGUccgagCCCCCGgGgcAGAGAUc -3'
miRNA:   3'- -ACCUUUAa----GGGGGCgU--UUUCUAu -5'
28762 3' -43.6 NC_006146.1 + 2073 0.67 0.999983
Target:  5'- cGGug---CCCCCGCGAGGGu-- -3'
miRNA:   3'- aCCuuuaaGGGGGCGUUUUCuau -5'
28762 3' -43.6 NC_006146.1 + 3005 0.67 0.999983
Target:  5'- cGGug---CCCCCGCGAGGGu-- -3'
miRNA:   3'- aCCuuuaaGGGGGCGUUUUCuau -5'
28762 3' -43.6 NC_006146.1 + 128736 0.67 0.999983
Target:  5'- cUGGAuugaUUCCCGCAGGGGGUGu -3'
miRNA:   3'- -ACCUuuaaGGGGGCGUUUUCUAU- -5'
28762 3' -43.6 NC_006146.1 + 3489 0.67 0.999988
Target:  5'- cUGGc--UUCCCCCGUAuccaccgcAGAGAUGa -3'
miRNA:   3'- -ACCuuuAAGGGGGCGU--------UUUCUAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.