miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28762 3' -43.6 NC_006146.1 + 91255 0.69 0.999804
Target:  5'- ----uAUUCCCCCGCAcuAAAGAa- -3'
miRNA:   3'- accuuUAAGGGGGCGU--UUUCUau -5'
28762 3' -43.6 NC_006146.1 + 155765 0.66 0.999997
Target:  5'- aGGAGcuguagacCCCgCCGCAGAAGAg- -3'
miRNA:   3'- aCCUUuaa-----GGG-GGCGUUUUCUau -5'
28762 3' -43.6 NC_006146.1 + 48252 0.66 0.999998
Target:  5'- cGGAGgg-CCCCCGCcgccguccuggcgcGAAAGAg- -3'
miRNA:   3'- aCCUUuaaGGGGGCG--------------UUUUCUau -5'
28762 3' -43.6 NC_006146.1 + 13449 0.66 0.999999
Target:  5'- cGGAGGgaCCCCgGCAGcccGGGUGg -3'
miRNA:   3'- aCCUUUaaGGGGgCGUUu--UCUAU- -5'
28762 3' -43.6 NC_006146.1 + 16527 0.66 0.999999
Target:  5'- cGGAGGgaCCCCgGCAGcccGGGUGg -3'
miRNA:   3'- aCCUUUaaGGGGgCGUUu--UCUAU- -5'
28762 3' -43.6 NC_006146.1 + 19605 0.66 0.999999
Target:  5'- cGGAGGgaCCCCgGCAGcccGGGUGg -3'
miRNA:   3'- aCCUUUaaGGGGgCGUUu--UCUAU- -5'
28762 3' -43.6 NC_006146.1 + 22683 0.66 0.999999
Target:  5'- cGGAGGgaCCCCgGCAGcccGGGUGg -3'
miRNA:   3'- aCCUUUaaGGGGgCGUUu--UCUAU- -5'
28762 3' -43.6 NC_006146.1 + 25761 0.66 0.999999
Target:  5'- cGGAGGgaCCCCgGCAGcccGGGUGg -3'
miRNA:   3'- aCCUUUaaGGGGgCGUUu--UCUAU- -5'
28762 3' -43.6 NC_006146.1 + 28839 0.66 0.999999
Target:  5'- cGGAGGgaCCCCgGCAGcccGGGUGg -3'
miRNA:   3'- aCCUUUaaGGGGgCGUUu--UCUAU- -5'
28762 3' -43.6 NC_006146.1 + 128967 0.66 0.999997
Target:  5'- uUGGGAAgaacgCCCCCGagauuGAAGAg- -3'
miRNA:   3'- -ACCUUUaa---GGGGGCgu---UUUCUau -5'
28762 3' -43.6 NC_006146.1 + 55004 0.66 0.999997
Target:  5'- cGGAAGc-CCCCCGgGcgGGAUGg -3'
miRNA:   3'- aCCUUUaaGGGGGCgUuuUCUAU- -5'
28762 3' -43.6 NC_006146.1 + 130497 0.69 0.999911
Target:  5'- gUGGcuacuuugCCCCCGCGGGAGGc- -3'
miRNA:   3'- -ACCuuuaa---GGGGGCGUUUUCUau -5'
28762 3' -43.6 NC_006146.1 + 99542 0.67 0.999983
Target:  5'- cUGGAAGUccgagCCCCCGgGgcAGAGAUc -3'
miRNA:   3'- -ACCUUUAa----GGGGGCgU--UUUCUAu -5'
28762 3' -43.6 NC_006146.1 + 3489 0.67 0.999988
Target:  5'- cUGGc--UUCCCCCGUAuccaccgcAGAGAUGa -3'
miRNA:   3'- -ACCuuuAAGGGGGCGU--------UUUCUAU- -5'
28762 3' -43.6 NC_006146.1 + 54814 0.67 0.999994
Target:  5'- uUGGAGAggaCCCgGCGGAGGGc- -3'
miRNA:   3'- -ACCUUUaagGGGgCGUUUUCUau -5'
28762 3' -43.6 NC_006146.1 + 145099 0.67 0.999994
Target:  5'- aGGGAugggUCCCCgGCGu-AGAUGa -3'
miRNA:   3'- aCCUUua--AGGGGgCGUuuUCUAU- -5'
28762 3' -43.6 NC_006146.1 + 159715 0.66 0.999996
Target:  5'- aUGGAAuggccaccagGUUcCCCCCGUAGAGGc-- -3'
miRNA:   3'- -ACCUU----------UAA-GGGGGCGUUUUCuau -5'
28762 3' -43.6 NC_006146.1 + 122768 0.66 0.999997
Target:  5'- uUGGGGAUcuggcggggcUCCCCgGCGAcAGAg- -3'
miRNA:   3'- -ACCUUUA----------AGGGGgCGUUuUCUau -5'
28762 3' -43.6 NC_006146.1 + 41271 0.66 0.999997
Target:  5'- cGGAGcacgCgCCCGCGGAGGAc- -3'
miRNA:   3'- aCCUUuaa-GgGGGCGUUUUCUau -5'
28762 3' -43.6 NC_006146.1 + 116301 0.66 0.999999
Target:  5'- cGGAuggcgCCCCCGCGguccucuccccaaGAGGAg- -3'
miRNA:   3'- aCCUuuaa-GGGGGCGU-------------UUUCUau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.