Results 1 - 20 of 47 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28763 | 3' | -52 | NC_006146.1 | + | 104832 | 0.71 | 0.827046 |
Target: 5'- -cAGGUGAUGGGGAGGuGGUcacAGCg-- -3' miRNA: 3'- guUCUACUACCCCUCC-CCGa--UUGaaa -5' |
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28763 | 3' | -52 | NC_006146.1 | + | 134596 | 0.66 | 0.978377 |
Target: 5'- --uGAUuGUGGGGGGaGGGCUcuCUUa -3' miRNA: 3'- guuCUAcUACCCCUC-CCCGAuuGAAa -5' |
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28763 | 3' | -52 | NC_006146.1 | + | 132860 | 0.68 | 0.952232 |
Target: 5'- aCAGGAgaGGUGGGGGuGGGGgUAAUg-- -3' miRNA: 3'- -GUUCUa-CUACCCCU-CCCCgAUUGaaa -5' |
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28763 | 3' | -52 | NC_006146.1 | + | 153526 | 0.68 | 0.943319 |
Target: 5'- -uGGAUGGagUGGGGGgcguGGGGCU-GCUUg -3' miRNA: 3'- guUCUACU--ACCCCU----CCCCGAuUGAAa -5' |
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28763 | 3' | -52 | NC_006146.1 | + | 170083 | 0.7 | 0.890518 |
Target: 5'- gGGGAUGGccgGcGGGAGGGGCcGGCg-- -3' miRNA: 3'- gUUCUACUa--C-CCCUCCCCGaUUGaaa -5' |
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28763 | 3' | -52 | NC_006146.1 | + | 169151 | 0.7 | 0.890518 |
Target: 5'- gGGGAUGGccgGcGGGAGGGGCcGGCg-- -3' miRNA: 3'- gUUCUACUa--C-CCCUCCCCGaUUGaaa -5' |
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28763 | 3' | -52 | NC_006146.1 | + | 51465 | 0.66 | 0.982794 |
Target: 5'- aGAGGUguggaGAUGGGcGGGGGCUGcgGCg-- -3' miRNA: 3'- gUUCUA-----CUACCCcUCCCCGAU--UGaaa -5' |
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28763 | 3' | -52 | NC_006146.1 | + | 156309 | 0.66 | 0.976901 |
Target: 5'- aGAGGUGAUGuagaggcgcggguccGGGAuGGGGCUcACg-- -3' miRNA: 3'- gUUCUACUAC---------------CCCU-CCCCGAuUGaaa -5' |
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28763 | 3' | -52 | NC_006146.1 | + | 51878 | 0.7 | 0.904042 |
Target: 5'- gGGGAUGAagaGGGGAGGGuGgaGGCUg- -3' miRNA: 3'- gUUCUACUa--CCCCUCCC-CgaUUGAaa -5' |
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28763 | 3' | -52 | NC_006146.1 | + | 168219 | 0.7 | 0.890518 |
Target: 5'- gGGGAUGGccgGcGGGAGGGGCcGGCg-- -3' miRNA: 3'- gUUCUACUa--C-CCCUCCCCGaUUGaaa -5' |
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28763 | 3' | -52 | NC_006146.1 | + | 51564 | 0.71 | 0.830544 |
Target: 5'- gGAGAUgGGUGGGGAGGcGGCgcggccgaagggggGACUg- -3' miRNA: 3'- gUUCUA-CUACCCCUCC-CCGa-------------UUGAaa -5' |
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28763 | 3' | -52 | NC_006146.1 | + | 164062 | 0.66 | 0.984729 |
Target: 5'- gGGGGUGAa-GGGAGGGGCa------ -3' miRNA: 3'- gUUCUACUacCCCUCCCCGauugaaa -5' |
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28763 | 3' | -52 | NC_006146.1 | + | 167287 | 0.7 | 0.890518 |
Target: 5'- gGGGAUGGccgGcGGGAGGGGCcGGCg-- -3' miRNA: 3'- gUUCUACUa--C-CCCUCCCCGaUUGaaa -5' |
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28763 | 3' | -52 | NC_006146.1 | + | 51682 | 0.67 | 0.970254 |
Target: 5'- gGGGgcGAcGGGGcGGGGGCUGAUc-- -3' miRNA: 3'- gUUCuaCUaCCCC-UCCCCGAUUGaaa -5' |
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28763 | 3' | -52 | NC_006146.1 | + | 42553 | 0.66 | 0.980679 |
Target: 5'- -cGGggGGUGGGGGGGcGCUGAa--- -3' miRNA: 3'- guUCuaCUACCCCUCCcCGAUUgaaa -5' |
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28763 | 3' | -52 | NC_006146.1 | + | 145048 | 0.67 | 0.963751 |
Target: 5'- cCGGGcgGgcGGGGAcGGGGCU-GCUc- -3' miRNA: 3'- -GUUCuaCuaCCCCU-CCCCGAuUGAaa -5' |
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28763 | 3' | -52 | NC_006146.1 | + | 148126 | 0.67 | 0.963751 |
Target: 5'- cCGGGcgGgcGGGGAcGGGGCU-GCUc- -3' miRNA: 3'- -GUUCuaCuaCCCCU-CCCCGAuUGAaa -5' |
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28763 | 3' | -52 | NC_006146.1 | + | 151204 | 0.67 | 0.963751 |
Target: 5'- cCGGGcgGgcGGGGAcGGGGCU-GCUc- -3' miRNA: 3'- -GUUCuaCuaCCCCU-CCCCGAuUGAaa -5' |
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28763 | 3' | -52 | NC_006146.1 | + | 154282 | 0.67 | 0.963751 |
Target: 5'- cCGGGcgGgcGGGGAcGGGGCU-GCUc- -3' miRNA: 3'- -GUUCuaCuaCCCCU-CCCCGAuUGAaa -5' |
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28763 | 3' | -52 | NC_006146.1 | + | 44010 | 0.66 | 0.975877 |
Target: 5'- gGAGGUGGaugUGGGGAGGGuCUuuuGGCUc- -3' miRNA: 3'- gUUCUACU---ACCCCUCCCcGA---UUGAaa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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