miRNA display CGI


Results 21 - 40 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28763 3' -52 NC_006146.1 + 70955 0.66 0.975877
Target:  5'- -cAGAUGAUGcGGAGGaGGCgggAGCg-- -3'
miRNA:   3'- guUCUACUACcCCUCC-CCGa--UUGaaa -5'
28763 3' -52 NC_006146.1 + 80 0.75 0.657924
Target:  5'- aAGGGUGAUuucGGGGAGGGGCUu----- -3'
miRNA:   3'- gUUCUACUA---CCCCUCCCCGAuugaaa -5'
28763 3' -52 NC_006146.1 + 41128 0.68 0.938482
Target:  5'- uUAGGGUcccgGGGGAGGGGCgugcGCUg- -3'
miRNA:   3'- -GUUCUAcua-CCCCUCCCCGau--UGAaa -5'
28763 3' -52 NC_006146.1 + 47727 0.68 0.947902
Target:  5'- uCGAGAU--UGGGGAggucuuggaGGGGCUGGCc-- -3'
miRNA:   3'- -GUUCUAcuACCCCU---------CCCCGAUUGaaa -5'
28763 3' -52 NC_006146.1 + 141430 0.68 0.952232
Target:  5'- uGGGGUGGccGGGGAGGGGUgggGAgUg- -3'
miRNA:   3'- gUUCUACUa-CCCCUCCCCGa--UUgAaa -5'
28763 3' -52 NC_006146.1 + 32140 0.66 0.975877
Target:  5'- cCGGGGUGcUGGGGuGGGGGaugGGCUc- -3'
miRNA:   3'- -GUUCUACuACCCC-UCCCCga-UUGAaa -5'
28763 3' -52 NC_006146.1 + 44010 0.66 0.975877
Target:  5'- gGAGGUGGaugUGGGGAGGGuCUuuuGGCUc- -3'
miRNA:   3'- gUUCUACU---ACCCCUCCCcGA---UUGAaa -5'
28763 3' -52 NC_006146.1 + 72015 0.67 0.973172
Target:  5'- -cGGGUGAguagcgGGGGAGuGGGUggUGACUc- -3'
miRNA:   3'- guUCUACUa-----CCCCUC-CCCG--AUUGAaa -5'
28763 3' -52 NC_006146.1 + 33228 0.67 0.967116
Target:  5'- cCGGGAUGGggcUGGGGuuccGGGGGUgggGGCUc- -3'
miRNA:   3'- -GUUCUACU---ACCCC----UCCCCGa--UUGAaa -5'
28763 3' -52 NC_006146.1 + 157360 0.67 0.963751
Target:  5'- cCGGGcgGgcGGGGAcGGGGCU-GCUc- -3'
miRNA:   3'- -GUUCuaCuaCCCCU-CCCCGAuUGAaa -5'
28763 3' -52 NC_006146.1 + 154282 0.67 0.963751
Target:  5'- cCGGGcgGgcGGGGAcGGGGCU-GCUc- -3'
miRNA:   3'- -GUUCuaCuaCCCCU-CCCCGAuUGAaa -5'
28763 3' -52 NC_006146.1 + 151204 0.67 0.963751
Target:  5'- cCGGGcgGgcGGGGAcGGGGCU-GCUc- -3'
miRNA:   3'- -GUUCuaCuaCCCCU-CCCCGAuUGAaa -5'
28763 3' -52 NC_006146.1 + 148126 0.67 0.963751
Target:  5'- cCGGGcgGgcGGGGAcGGGGCU-GCUc- -3'
miRNA:   3'- -GUUCuaCuaCCCCU-CCCCGAuUGAaa -5'
28763 3' -52 NC_006146.1 + 145048 0.67 0.963751
Target:  5'- cCGGGcgGgcGGGGAcGGGGCU-GCUc- -3'
miRNA:   3'- -GUUCuaCuaCCCCU-CCCCGAuUGAaa -5'
28763 3' -52 NC_006146.1 + 39528 0.68 0.956314
Target:  5'- --uGAUGGgcugGGGGAGGcGGCgcaagGGCUg- -3'
miRNA:   3'- guuCUACUa---CCCCUCC-CCGa----UUGAaa -5'
28763 3' -52 NC_006146.1 + 156819 0.68 0.952232
Target:  5'- uGGGGUGGccGGGGAGGGGUgggGAgUg- -3'
miRNA:   3'- gUUCUACUa-CCCCUCCCCGa--UUgAaa -5'
28763 3' -52 NC_006146.1 + 153741 0.68 0.952232
Target:  5'- uGGGGUGGccGGGGAGGGGUgggGAgUg- -3'
miRNA:   3'- gUUCUACUa-CCCCUCCCCGa--UUgAaa -5'
28763 3' -52 NC_006146.1 + 150664 0.68 0.952232
Target:  5'- uGGGGUGGccGGGGAGGGGUgggGAgUg- -3'
miRNA:   3'- gUUCUACUa-CCCCUCCCCGa--UUgAaa -5'
28763 3' -52 NC_006146.1 + 147586 0.68 0.952232
Target:  5'- uGGGGUGGccGGGGAGGGGUgggGAgUg- -3'
miRNA:   3'- gUUCUACUa-CCCCUCCCCGa--UUgAaa -5'
28763 3' -52 NC_006146.1 + 144508 0.68 0.952232
Target:  5'- uGGGGUGGccGGGGAGGGGUgggGAgUg- -3'
miRNA:   3'- gUUCUACUa-CCCCUCCCCGa--UUgAaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.