Results 41 - 47 of 47 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28763 | 3' | -52 | NC_006146.1 | + | 39528 | 0.68 | 0.956314 |
Target: 5'- --uGAUGGgcugGGGGAGGcGGCgcaagGGCUg- -3' miRNA: 3'- guuCUACUa---CCCCUCC-CCGa----UUGAaa -5' |
|||||||
28763 | 3' | -52 | NC_006146.1 | + | 156819 | 0.68 | 0.952232 |
Target: 5'- uGGGGUGGccGGGGAGGGGUgggGAgUg- -3' miRNA: 3'- gUUCUACUa-CCCCUCCCCGa--UUgAaa -5' |
|||||||
28763 | 3' | -52 | NC_006146.1 | + | 153741 | 0.68 | 0.952232 |
Target: 5'- uGGGGUGGccGGGGAGGGGUgggGAgUg- -3' miRNA: 3'- gUUCUACUa-CCCCUCCCCGa--UUgAaa -5' |
|||||||
28763 | 3' | -52 | NC_006146.1 | + | 150664 | 0.68 | 0.952232 |
Target: 5'- uGGGGUGGccGGGGAGGGGUgggGAgUg- -3' miRNA: 3'- gUUCUACUa-CCCCUCCCCGa--UUgAaa -5' |
|||||||
28763 | 3' | -52 | NC_006146.1 | + | 147586 | 0.68 | 0.952232 |
Target: 5'- uGGGGUGGccGGGGAGGGGUgggGAgUg- -3' miRNA: 3'- gUUCUACUa-CCCCUCCCCGa--UUgAaa -5' |
|||||||
28763 | 3' | -52 | NC_006146.1 | + | 144508 | 0.68 | 0.952232 |
Target: 5'- uGGGGUGGccGGGGAGGGGUgggGAgUg- -3' miRNA: 3'- gUUCUACUa-CCCCUCCCCGa--UUgAaa -5' |
|||||||
28763 | 3' | -52 | NC_006146.1 | + | 141430 | 0.68 | 0.952232 |
Target: 5'- uGGGGUGGccGGGGAGGGGUgggGAgUg- -3' miRNA: 3'- gUUCUACUa-CCCCUCCCCGa--UUgAaa -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home