Results 41 - 47 of 47 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio #
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P value |
| Predicted miRNA align pattern | |||||||
| 28763 | 3' | -52 | NC_006146.1 | + | 140113 | 0.7 | 0.876011 |
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Target: 5'- gGAGGUGGUGGaaGAGGGGgUGGCg-- -3' miRNA: 3'- gUUCUACUACCc-CUCCCCgAUUGaaa -5' |
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| 28763 | 3' | -52 | NC_006146.1 | + | 51564 | 0.71 | 0.830544 |
|
Target: 5'- gGAGAUgGGUGGGGAGGcGGCgcggccgaagggggGACUg- -3' miRNA: 3'- gUUCUA-CUACCCCUCC-CCGa-------------UUGAaa -5' |
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| 28763 | 3' | -52 | NC_006146.1 | + | 104832 | 0.71 | 0.827046 |
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Target: 5'- -cAGGUGAUGGGGAGGuGGUcacAGCg-- -3' miRNA: 3'- guUCUACUACCCCUCC-CCGa--UUGaaa -5' |
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| 28763 | 3' | -52 | NC_006146.1 | + | 88585 | 0.71 | 0.8525 |
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Target: 5'- gGAGcUGGUGGGGGcuGGGGCUGuugugGCUg- -3' miRNA: 3'- gUUCuACUACCCCU--CCCCGAU-----UGAaa -5' |
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| 28763 | 3' | -52 | NC_006146.1 | + | 105553 | 0.71 | 0.8525 |
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Target: 5'- aGAGAUGAugaggaUGGGGAGGaGGCcgGACc-- -3' miRNA: 3'- gUUCUACU------ACCCCUCC-CCGa-UUGaaa -5' |
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| 28763 | 3' | -52 | NC_006146.1 | + | 80 | 0.75 | 0.657924 |
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Target: 5'- aAGGGUGAUuucGGGGAGGGGCUu----- -3' miRNA: 3'- gUUCUACUA---CCCCUCCCCGAuugaaa -5' |
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| 28763 | 3' | -52 | NC_006146.1 | + | 133900 | 1.05 | 0.012001 |
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Target: 5'- uCAAGAUGAUGGGGAGGGGCUAACUUUu -3' miRNA: 3'- -GUUCUACUACCCCUCCCCGAUUGAAA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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