miRNA display CGI

Results 41 - 47 of 47 are showing below:
Show page: 1 2 3

<< Previous Page | Next Page >>

ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
28763	3'	-52	NC_006146.1	+	52690	0.66	0.975353
	Target:  5'- cCGAGAUGGUcgcugccguguccGGGGAgaaugugcucaagGGGGUUAGCa-- -3' miRNA:   3'- -GUUCUACUA-------------CCCCU-------------CCCCGAUUGaaa -5'
28763	3'	-52	NC_006146.1	+	44010	0.66	0.975877
	Target:  5'- gGAGGUGGaugUGGGGAGGGuCUuuuGGCUc- -3' miRNA:   3'- gUUCUACU---ACCCCUCCCcGA---UUGAaa -5'
28763	3'	-52	NC_006146.1	+	70955	0.66	0.975877
	Target:  5'- -cAGAUGAUGcGGAGGaGGCgggAGCg-- -3' miRNA:   3'- guUCUACUACcCCUCC-CCGa--UUGaaa -5'
28763	3'	-52	NC_006146.1	+	32140	0.66	0.975877
	Target:  5'- cCGGGGUGcUGGGGuGGGGGaugGGCUc- -3' miRNA:   3'- -GUUCUACuACCCC-UCCCCga-UUGAaa -5'
28763	3'	-52	NC_006146.1	+	61824	0.66	0.975877
	Target:  5'- aGGGGcgcUGGUGGGGGcaguGGGGCUggUg-- -3' miRNA:   3'- gUUCU---ACUACCCCU----CCCCGAuuGaaa -5'
28763	3'	-52	NC_006146.1	+	135970	0.66	0.975877
	Target:  5'- cCGGGGUGcUGGGGuGGGGGaugGGCUc- -3' miRNA:   3'- -GUUCUACuACCCC-UCCCCga-UUGAaa -5'
28763	3'	-52	NC_006146.1	+	48225	0.66	0.982794
	Target:  5'- --cGAUGAgaaGGAGGGGCUgcaGACUa- -3' miRNA:   3'- guuCUACUaccCCUCCCCGA---UUGAaa -5'

<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home