Results 41 - 47 of 47 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
28763 | 3' | -52 | NC_006146.1 | + | 52690 | 0.66 | 0.975353 |
Target: 5'- cCGAGAUGGUcgcugccguguccGGGGAgaaugugcucaagGGGGUUAGCa-- -3' miRNA: 3'- -GUUCUACUA-------------CCCCU-------------CCCCGAUUGaaa -5' |
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28763 | 3' | -52 | NC_006146.1 | + | 44010 | 0.66 | 0.975877 |
Target: 5'- gGAGGUGGaugUGGGGAGGGuCUuuuGGCUc- -3' miRNA: 3'- gUUCUACU---ACCCCUCCCcGA---UUGAaa -5' |
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28763 | 3' | -52 | NC_006146.1 | + | 70955 | 0.66 | 0.975877 |
Target: 5'- -cAGAUGAUGcGGAGGaGGCgggAGCg-- -3' miRNA: 3'- guUCUACUACcCCUCC-CCGa--UUGaaa -5' |
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28763 | 3' | -52 | NC_006146.1 | + | 32140 | 0.66 | 0.975877 |
Target: 5'- cCGGGGUGcUGGGGuGGGGGaugGGCUc- -3' miRNA: 3'- -GUUCUACuACCCC-UCCCCga-UUGAaa -5' |
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28763 | 3' | -52 | NC_006146.1 | + | 61824 | 0.66 | 0.975877 |
Target: 5'- aGGGGcgcUGGUGGGGGcaguGGGGCUggUg-- -3' miRNA: 3'- gUUCU---ACUACCCCU----CCCCGAuuGaaa -5' |
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28763 | 3' | -52 | NC_006146.1 | + | 135970 | 0.66 | 0.975877 |
Target: 5'- cCGGGGUGcUGGGGuGGGGGaugGGCUc- -3' miRNA: 3'- -GUUCUACuACCCC-UCCCCga-UUGAaa -5' |
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28763 | 3' | -52 | NC_006146.1 | + | 48225 | 0.66 | 0.982794 |
Target: 5'- --cGAUGAgaaGGAGGGGCUgcaGACUa- -3' miRNA: 3'- guuCUACUaccCCUCCCCGA---UUGAaa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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