miRNA display CGI


Results 21 - 40 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28763 3' -52 NC_006146.1 + 88585 0.71 0.8525
Target:  5'- gGAGcUGGUGGGGGcuGGGGCUGuugugGCUg- -3'
miRNA:   3'- gUUCuACUACCCCU--CCCCGAU-----UGAaa -5'
28763 3' -52 NC_006146.1 + 104832 0.71 0.827046
Target:  5'- -cAGGUGAUGGGGAGGuGGUcacAGCg-- -3'
miRNA:   3'- guUCUACUACCCCUCC-CCGa--UUGaaa -5'
28763 3' -52 NC_006146.1 + 105553 0.71 0.8525
Target:  5'- aGAGAUGAugaggaUGGGGAGGaGGCcgGACc-- -3'
miRNA:   3'- gUUCUACU------ACCCCUCC-CCGa-UUGaaa -5'
28763 3' -52 NC_006146.1 + 132860 0.68 0.952232
Target:  5'- aCAGGAgaGGUGGGGGuGGGGgUAAUg-- -3'
miRNA:   3'- -GUUCUa-CUACCCCU-CCCCgAUUGaaa -5'
28763 3' -52 NC_006146.1 + 133900 1.05 0.012001
Target:  5'- uCAAGAUGAUGGGGAGGGGCUAACUUUu -3'
miRNA:   3'- -GUUCUACUACCCCUCCCCGAUUGAAA- -5'
28763 3' -52 NC_006146.1 + 134596 0.66 0.978377
Target:  5'- --uGAUuGUGGGGGGaGGGCUcuCUUa -3'
miRNA:   3'- guuCUAcUACCCCUC-CCCGAuuGAAa -5'
28763 3' -52 NC_006146.1 + 135970 0.66 0.975877
Target:  5'- cCGGGGUGcUGGGGuGGGGGaugGGCUc- -3'
miRNA:   3'- -GUUCUACuACCCC-UCCCCga-UUGAaa -5'
28763 3' -52 NC_006146.1 + 140113 0.7 0.876011
Target:  5'- gGAGGUGGUGGaaGAGGGGgUGGCg-- -3'
miRNA:   3'- gUUCUACUACCc-CUCCCCgAUUGaaa -5'
28763 3' -52 NC_006146.1 + 141430 0.68 0.952232
Target:  5'- uGGGGUGGccGGGGAGGGGUgggGAgUg- -3'
miRNA:   3'- gUUCUACUa-CCCCUCCCCGa--UUgAaa -5'
28763 3' -52 NC_006146.1 + 141970 0.67 0.963751
Target:  5'- cCGGGcgGgcGGGGAcGGGGCU-GCUc- -3'
miRNA:   3'- -GUUCuaCuaCCCCU-CCCCGAuUGAaa -5'
28763 3' -52 NC_006146.1 + 144508 0.68 0.952232
Target:  5'- uGGGGUGGccGGGGAGGGGUgggGAgUg- -3'
miRNA:   3'- gUUCUACUa-CCCCUCCCCGa--UUgAaa -5'
28763 3' -52 NC_006146.1 + 145048 0.67 0.963751
Target:  5'- cCGGGcgGgcGGGGAcGGGGCU-GCUc- -3'
miRNA:   3'- -GUUCuaCuaCCCCU-CCCCGAuUGAaa -5'
28763 3' -52 NC_006146.1 + 147586 0.68 0.952232
Target:  5'- uGGGGUGGccGGGGAGGGGUgggGAgUg- -3'
miRNA:   3'- gUUCUACUa-CCCCUCCCCGa--UUgAaa -5'
28763 3' -52 NC_006146.1 + 148126 0.67 0.963751
Target:  5'- cCGGGcgGgcGGGGAcGGGGCU-GCUc- -3'
miRNA:   3'- -GUUCuaCuaCCCCU-CCCCGAuUGAaa -5'
28763 3' -52 NC_006146.1 + 150664 0.68 0.952232
Target:  5'- uGGGGUGGccGGGGAGGGGUgggGAgUg- -3'
miRNA:   3'- gUUCUACUa-CCCCUCCCCGa--UUgAaa -5'
28763 3' -52 NC_006146.1 + 151204 0.67 0.963751
Target:  5'- cCGGGcgGgcGGGGAcGGGGCU-GCUc- -3'
miRNA:   3'- -GUUCuaCuaCCCCU-CCCCGAuUGAaa -5'
28763 3' -52 NC_006146.1 + 153526 0.68 0.943319
Target:  5'- -uGGAUGGagUGGGGGgcguGGGGCU-GCUUg -3'
miRNA:   3'- guUCUACU--ACCCCU----CCCCGAuUGAAa -5'
28763 3' -52 NC_006146.1 + 153741 0.68 0.952232
Target:  5'- uGGGGUGGccGGGGAGGGGUgggGAgUg- -3'
miRNA:   3'- gUUCUACUa-CCCCUCCCCGa--UUgAaa -5'
28763 3' -52 NC_006146.1 + 154282 0.67 0.963751
Target:  5'- cCGGGcgGgcGGGGAcGGGGCU-GCUc- -3'
miRNA:   3'- -GUUCuaCuaCCCCU-CCCCGAuUGAaa -5'
28763 3' -52 NC_006146.1 + 156309 0.66 0.976901
Target:  5'- aGAGGUGAUGuagaggcgcggguccGGGAuGGGGCUcACg-- -3'
miRNA:   3'- gUUCUACUAC---------------CCCU-CCCCGAuUGaaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.