miRNA display CGI


Results 21 - 40 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28763 3' -52 NC_006146.1 + 135970 0.66 0.975877
Target:  5'- cCGGGGUGcUGGGGuGGGGGaugGGCUc- -3'
miRNA:   3'- -GUUCUACuACCCC-UCCCCga-UUGAaa -5'
28763 3' -52 NC_006146.1 + 134596 0.66 0.978377
Target:  5'- --uGAUuGUGGGGGGaGGGCUcuCUUa -3'
miRNA:   3'- guuCUAcUACCCCUC-CCCGAuuGAAa -5'
28763 3' -52 NC_006146.1 + 133900 1.05 0.012001
Target:  5'- uCAAGAUGAUGGGGAGGGGCUAACUUUu -3'
miRNA:   3'- -GUUCUACUACCCCUCCCCGAUUGAAA- -5'
28763 3' -52 NC_006146.1 + 132860 0.68 0.952232
Target:  5'- aCAGGAgaGGUGGGGGuGGGGgUAAUg-- -3'
miRNA:   3'- -GUUCUa-CUACCCCU-CCCCgAUUGaaa -5'
28763 3' -52 NC_006146.1 + 105553 0.71 0.8525
Target:  5'- aGAGAUGAugaggaUGGGGAGGaGGCcgGACc-- -3'
miRNA:   3'- gUUCUACU------ACCCCUCC-CCGa-UUGaaa -5'
28763 3' -52 NC_006146.1 + 104832 0.71 0.827046
Target:  5'- -cAGGUGAUGGGGAGGuGGUcacAGCg-- -3'
miRNA:   3'- guUCUACUACCCCUCC-CCGa--UUGaaa -5'
28763 3' -52 NC_006146.1 + 88585 0.71 0.8525
Target:  5'- gGAGcUGGUGGGGGcuGGGGCUGuugugGCUg- -3'
miRNA:   3'- gUUCuACUACCCCU--CCCCGAU-----UGAaa -5'
28763 3' -52 NC_006146.1 + 77836 0.7 0.890518
Target:  5'- gGAGggGggGGcGGGGGGGUggGACUUUg -3'
miRNA:   3'- gUUCuaCuaCC-CCUCCCCGa-UUGAAA- -5'
28763 3' -52 NC_006146.1 + 72015 0.67 0.973172
Target:  5'- -cGGGUGAguagcgGGGGAGuGGGUggUGACUc- -3'
miRNA:   3'- guUCUACUa-----CCCCUC-CCCG--AUUGAaa -5'
28763 3' -52 NC_006146.1 + 70955 0.66 0.975877
Target:  5'- -cAGAUGAUGcGGAGGaGGCgggAGCg-- -3'
miRNA:   3'- guUCUACUACcCCUCC-CCGa--UUGaaa -5'
28763 3' -52 NC_006146.1 + 61824 0.66 0.975877
Target:  5'- aGGGGcgcUGGUGGGGGcaguGGGGCUggUg-- -3'
miRNA:   3'- gUUCU---ACUACCCCU----CCCCGAuuGaaa -5'
28763 3' -52 NC_006146.1 + 52690 0.66 0.975353
Target:  5'- cCGAGAUGGUcgcugccguguccGGGGAgaaugugcucaagGGGGUUAGCa-- -3'
miRNA:   3'- -GUUCUACUA-------------CCCCU-------------CCCCGAUUGaaa -5'
28763 3' -52 NC_006146.1 + 51878 0.7 0.904042
Target:  5'- gGGGAUGAagaGGGGAGGGuGgaGGCUg- -3'
miRNA:   3'- gUUCUACUa--CCCCUCCC-CgaUUGAaa -5'
28763 3' -52 NC_006146.1 + 51682 0.67 0.970254
Target:  5'- gGGGgcGAcGGGGcGGGGGCUGAUc-- -3'
miRNA:   3'- gUUCuaCUaCCCC-UCCCCGAUUGaaa -5'
28763 3' -52 NC_006146.1 + 51564 0.71 0.830544
Target:  5'- gGAGAUgGGUGGGGAGGcGGCgcggccgaagggggGACUg- -3'
miRNA:   3'- gUUCUA-CUACCCCUCC-CCGa-------------UUGAaa -5'
28763 3' -52 NC_006146.1 + 51465 0.66 0.982794
Target:  5'- aGAGGUguggaGAUGGGcGGGGGCUGcgGCg-- -3'
miRNA:   3'- gUUCUA-----CUACCCcUCCCCGAU--UGaaa -5'
28763 3' -52 NC_006146.1 + 48225 0.66 0.982794
Target:  5'- --cGAUGAgaaGGAGGGGCUgcaGACUa- -3'
miRNA:   3'- guuCUACUaccCCUCCCCGA---UUGAaa -5'
28763 3' -52 NC_006146.1 + 47727 0.68 0.947902
Target:  5'- uCGAGAU--UGGGGAggucuuggaGGGGCUGGCc-- -3'
miRNA:   3'- -GUUCUAcuACCCCU---------CCCCGAUUGaaa -5'
28763 3' -52 NC_006146.1 + 44010 0.66 0.975877
Target:  5'- gGAGGUGGaugUGGGGAGGGuCUuuuGGCUc- -3'
miRNA:   3'- gUUCUACU---ACCCCUCCCcGA---UUGAaa -5'
28763 3' -52 NC_006146.1 + 42553 0.66 0.980679
Target:  5'- -cGGggGGUGGGGGGGcGCUGAa--- -3'
miRNA:   3'- guUCuaCUACCCCUCCcCGAUUgaaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.